Population Structure of the Vernal Pool Fairy Shrimp (Branchinecta Lynchi) at Two Spatial Scales PDF Download
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Author: Publisher: ISBN: Category : Biology Languages : en Pages : 118
Book Description
Patterns of dispersal and gene-flow in freshwater invertebrates have often been difficult to interpret. Despite the assumed high potential for dispersal, populations of freshwater invertebrates display high genetic differentiation over small distances. There have been several explanations posed for this gene flow dispersal paradox, including strong priority effects or low realized dispersal. This study explores the spatial genetic structure of the freshwater invertebrate Branchinecta lynchi, a threatened vernal pool inhabitant, at two scales with a goal to determine the scale at which gene flow is important in shaping these patterns. Vernal pools were sampled at two different localities the San Luis National Wildlife Refuge Complex and a preserve adjacent to the University of California, Merced. Individuals were genotyped using both the mitochondrial cytochrome oxidase I subunit (COI) and nuclear amplified fragment length polymorphisms (AFLPs). Pairwise Fst values showed that genetic structure for this species was high, however, the only geographic pattern that emerged was isolation by distance at the local scale for the COI marker. Discrepancies between mitochondrial and AFLP markers may be explained several ways, including genotyping error, sex-biased dispersal and/or the longer time to equilibrium of the nuclear genome. These results suggest that gene flow is important at the local scale, at least for mitochondrial DNA, while historical colonization patterns are likely maintained at the regional scale by priority effects. I infer that maintaining connectivity among vernal pool complexes through local dispersal vectors should be a management priority.
Author: Publisher: ISBN: Category : Biology Languages : en Pages : 118
Book Description
Patterns of dispersal and gene-flow in freshwater invertebrates have often been difficult to interpret. Despite the assumed high potential for dispersal, populations of freshwater invertebrates display high genetic differentiation over small distances. There have been several explanations posed for this gene flow dispersal paradox, including strong priority effects or low realized dispersal. This study explores the spatial genetic structure of the freshwater invertebrate Branchinecta lynchi, a threatened vernal pool inhabitant, at two scales with a goal to determine the scale at which gene flow is important in shaping these patterns. Vernal pools were sampled at two different localities the San Luis National Wildlife Refuge Complex and a preserve adjacent to the University of California, Merced. Individuals were genotyped using both the mitochondrial cytochrome oxidase I subunit (COI) and nuclear amplified fragment length polymorphisms (AFLPs). Pairwise Fst values showed that genetic structure for this species was high, however, the only geographic pattern that emerged was isolation by distance at the local scale for the COI marker. Discrepancies between mitochondrial and AFLP markers may be explained several ways, including genotyping error, sex-biased dispersal and/or the longer time to equilibrium of the nuclear genome. These results suggest that gene flow is important at the local scale, at least for mitochondrial DNA, while historical colonization patterns are likely maintained at the regional scale by priority effects. I infer that maintaining connectivity among vernal pool complexes through local dispersal vectors should be a management priority.
Author: Brendan Calhoun Kyle Publisher: ISBN: Category : Anostraca Languages : en Pages : 0
Book Description
Wetlands are rapidly being lost from human impacts, and in California the effects are especially dramatic. Sensitive wetland habitats, like vernal pools, are at risk of being lost. Vernal pools are home to many endemic species, so the conservation of vernal pools is critical to maintaining California's biodiversity. Understanding the ecological, physiological, and genetic aspects of a species is important when implementing critical management for the persistence of endangered species. The longhorn fairy shrimp, Branchinecta longiantenna, is one of several endemic and endangered inhabitants of California's vernal pools. Longhorn fairy shrimp distribution is quite restricted, they are found in only three regions of California (Altamont Pass, Kesterson National Wildlife Refuge, and Carrizo Plains). Little is known about their ecology, physiology, and genetics. My research aimed to establish a framework of our genetic understanding of longhorn fairy shrimp throughout its range. I analyzed population genomic data for samples collected from each region to determine population structure and variation. I found evidence for phylogeographic structure associated with isolated regions from pairwise estimates of population differentiation, principal component analysis, and phylogenetics. Differentiation within regions was generally low, but much higher at Altamont Pass, which is likely due to differences in population size and dispersal. This is also reflected in levels of heterozygosity, which were much lower in the Altamont Pass pool than any other. These differences stress that management programs should use evolutionary significant units that distinguish longhorn fairy shrimp by their respective regions when developing conservation plans for this species.
Author: Publisher: ISBN: Category : Dissertations, Academic Languages : en Pages : 81
Book Description
Population genetic data are becoming an increasingly important tool in the conservation and management of endangered species. Statistical analysis of genetic data can inform agencies on population boundaries within a species, and help to infer processes that lead to genetic patterns, thereby influencing conservation decisions. This thesis examines population genetics in the endangered San Diego fairy shrimp, Branchinecta sandiegonensis, using multiple molecular markers. In order to quantify diversity and population structure, genetic data were collected from 50 pools from 23 pool complexes scattered throughout San Diego County at seven novel microsatellite loci. We tested the hypothesis that pool complex boundaries and geographic distance are important components of genetic structure. Microsatellite and mtDNA genetic patterns were compared to test for concordance between marker types. We also conducted preliminary tests for the effect of pool disturbance and hybridization on genetic diversity. Overall, results show that there is considerable microsatellite diversity within pools. In the preliminary tests, no significant change in genetic diversity in response to hybridization was detected. Disturbance may affect genetic diversity within pools, but it is unclear which component of disturbance is correlated with diversity. Overall, genetic differentiation among pool complexes is relatively strong. The hierarchical spatial arrangement of pools plays a significant role in genetic divergence among populations. Increasing geographic distances between sites is a significant gene flow barrier for this species, as has been found for other fairy shrimp species. Evidence of historical isolation between two divergent groups was also found. There is concordance among marker types, with some discrepancies. Population genetic structure in B. sandiegonensis across the study range is governed by gene flow restricted primarily to pool complexes. We recommend that pool complexes be treated as management units provided that pools are ecologically similar within them. Historical divergence among groups of pools should be taken into account as well, in order to maintain genetic variation and dispersal mechanisms across the species' range.
Author: Marie A. Simovich Publisher: Springer ISBN: 9789048150014 Category : Science Languages : en Pages : 0
Book Description
This volume is a collection of papers concerning the biology of large branchiopod crustaceans: Anostraca, Conchostraca, and Notostraca. Many of the individual papers were first presented at the Third International Large Branchiopod Symposium (ILBS-3) held at the University of San Diego, CA, USA, July 15-18, 1996. Contributions on additional topics from participants at the symposium, and from colleagues not able to join us in San Diego, are also included. In addition, there is a supplement to the 1995 `Checklist of the Anostraca'. The theme of the ILBS-3 was `understanding and conserving large branchiopod diversity'. Researchers from around the world presented papers on a variety of topics related to conservation of large branchiopods, with contributions ranging from alpha-taxonomy and zoogeography to community structure and studies of ecology and evolution. One important issue developed in many of the papers in this volume is the need to advance our understanding of basic aspects of branchiopod biology throughout the world in order to enhance our efforts to conserve them. Although we have made important strides in understanding the biology of large branchiopods, we have, with few notable exceptions, made little progress in assuring the conservation of their diversity. We hope this volume will supply the reader with new ideas, and generate enthusiasm for research and public education efforts on behalf of branchiopod conservation.
Author: F. Martin Ralph Publisher: Springer Nature ISBN: 3030289060 Category : Science Languages : en Pages : 284
Book Description
This book is the standard reference based on roughly 20 years of research on atmospheric rivers, emphasizing progress made on key research and applications questions and remaining knowledge gaps. The book presents the history of atmospheric-rivers research, the current state of scientific knowledge, tools, and policy-relevant (science-informed) problems that lend themselves to real-world application of the research—and how the topic fits into larger national and global contexts. This book is written by a global team of authors who have conducted and published the majority of critical research on atmospheric rivers over the past years. The book is intended to benefit practitioners in the fields of meteorology, hydrology and related disciplines, including students as well as senior researchers.
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Author: Brendan Calhoun Kyle
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Author: Bohonak, Andrew J.
Author: American Association for the Advancement of Science. Pacific Division
Author: Marie A. Simovich
Author: Clyde H. Eriksen
Author: Carol W. Witham
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Author: F. Martin Ralph