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Intermediate Filament Mechanics Across Scales – From Single Filaments to Single Interactions and Networks in Cells

Intermediate Filament Mechanics Across Scales – From Single Filaments to Single Interactions and Networks in Cells PDF Author: Anna Veronika Schepers
Publisher: Universitätsverlag Göttingen
ISBN: 3863955676
Category :
Languages : en
Pages : 247

Book Description
The mechanical properties of cells are largely determined by the cytoskeleton. The cytoskeleton is an intricate and complex structure formed by protein filaments, motor proteins, and crosslinkers. The three main types of protein filaments are microtubules, actin filaments, and intermediate filaments ( IFs ). Whereas the proteins that form microtubules and actin filaments are exceptionally conserved throughout cell types and organisms, the family of IFs is diverse. For example, the IF protein vimentin is expressed in relatively motile fibroblasts, and keratin IFs are found in epithelial cells. This variety of IF proteins might therefore be linked to the various mechanical properties of different cell types. In the scope of this thesis, I combine studies of IF mechanics on different time scales and in systems of increasing complexity, from single filaments to networks in cells. This multiscale approach allows for the simplification necessary to interpret observations while adding increasing physiological context in subsequent experiments. We especially focus on the tunability of the IF mechanics by environmental cues in these increasingly complex systems. In a series of experiments, including single filament elongation studies, single filament stretching measurements with optical tweezers, filament-filament interaction measurements with four optical tweezers, microrheology, and isotropic cell stretching, we characterize how electrostatic (pH and ion concentration) and hydrophobic interactions (detergent) provide various mechanisms by which the mechanics of the IF cytoskeleton can be tuned. These studies reveal how small changes, such as charge shifts, influence IF mechanics on multiple scales. In combination with simulations, we determine the mechanisms by which charge shifts alter single vimentin filament mechanics and we extract energy landscapes for interactions between single filaments. Such insights will provide a deeper understanding of the mechanisms by which cells can maintain their integrity and adapt to the mechanical requirements set by their environment.

Intermediate Filament Mechanics Across Scales – From Single Filaments to Single Interactions and Networks in Cells

Intermediate Filament Mechanics Across Scales – From Single Filaments to Single Interactions and Networks in Cells PDF Author: Anna Veronika Schepers
Publisher: Universitätsverlag Göttingen
ISBN: 3863955676
Category :
Languages : en
Pages : 247

Book Description
The mechanical properties of cells are largely determined by the cytoskeleton. The cytoskeleton is an intricate and complex structure formed by protein filaments, motor proteins, and crosslinkers. The three main types of protein filaments are microtubules, actin filaments, and intermediate filaments ( IFs ). Whereas the proteins that form microtubules and actin filaments are exceptionally conserved throughout cell types and organisms, the family of IFs is diverse. For example, the IF protein vimentin is expressed in relatively motile fibroblasts, and keratin IFs are found in epithelial cells. This variety of IF proteins might therefore be linked to the various mechanical properties of different cell types. In the scope of this thesis, I combine studies of IF mechanics on different time scales and in systems of increasing complexity, from single filaments to networks in cells. This multiscale approach allows for the simplification necessary to interpret observations while adding increasing physiological context in subsequent experiments. We especially focus on the tunability of the IF mechanics by environmental cues in these increasingly complex systems. In a series of experiments, including single filament elongation studies, single filament stretching measurements with optical tweezers, filament-filament interaction measurements with four optical tweezers, microrheology, and isotropic cell stretching, we characterize how electrostatic (pH and ion concentration) and hydrophobic interactions (detergent) provide various mechanisms by which the mechanics of the IF cytoskeleton can be tuned. These studies reveal how small changes, such as charge shifts, influence IF mechanics on multiple scales. In combination with simulations, we determine the mechanisms by which charge shifts alter single vimentin filament mechanics and we extract energy landscapes for interactions between single filaments. Such insights will provide a deeper understanding of the mechanisms by which cells can maintain their integrity and adapt to the mechanical requirements set by their environment.

Intermediate Filament Proteins

Intermediate Filament Proteins PDF Author:
Publisher: Academic Press
ISBN: 9780128034705
Category : Science
Languages : en
Pages : 0

Book Description
Intermediate Filament Proteins, the latest volume in the Methods in Enzymology series covers all the intermediate filaments in vertebrates and invertebrates, providing a unique understanding of the multiple different tissue-specific intermediate filaments. This volume also covers the latest methods that are currently being used to study intermediate filament protein function and dynamics. It will be an important companion for any experimentalist interesting in studying this protein family in their cell or organism model system.

Intermediate filaments structure, function and clinical significance

Intermediate filaments structure, function and clinical significance PDF Author: Yaming Jiu
Publisher: Frontiers Media SA
ISBN: 2832510469
Category : Science
Languages : en
Pages : 176

Book Description


Advances in Cell Mechanics

Advances in Cell Mechanics PDF Author: Shaofan Li
Publisher: Springer Science & Business Media
ISBN: 3642175902
Category : Technology & Engineering
Languages : en
Pages : 326

Book Description
"Advances in Cell Mechanics" presents the latest developments in cell mechanics and biophysics, mainly focusing on interdisciplinary research in cell biology and the biophysics of cells. Moreover, a unique feature of the book is its emphasis on the molecular and complex continuum modeling and simulations of the cells. It may be the first work that brings rigorous and quantitative scientific analysis and state-of-the-art simulation technology into cell biology research. The book is intended for researchers and graduate students working in the fields of molecular cell biology, bio-engineering and bio-mechanics, soft matter physics, computational mechanics, bio-chemistry and bio-medicine. All contributors are leading scholars in their respective fields. Dr. Shaofan Li is a professor and an expert for computational mechanics at the University of California-Berkeley, USA; Dr. Bohua Sun is a professor at Cape Peninsula University of Technology, South Africa.

The Cytoskeleton

The Cytoskeleton PDF Author: James Spudich
Publisher:
ISBN: 9780824331733
Category : Actin
Languages : en
Pages : 0

Book Description


Mechanobiology of Cell-Cell and Cell-Matrix Interactions

Mechanobiology of Cell-Cell and Cell-Matrix Interactions PDF Author: A. Wagoner Johnson
Publisher: Springer Science & Business Media
ISBN: 1441980830
Category : Technology & Engineering
Languages : en
Pages : 329

Book Description
Mechanobiology of Cell-Matrix Interactions focuses on characterization and modeling of interactions between cells and their local extracellular environment, exploring how these interactions may mediate cell behavior. Studies of cell-matrix interactions rely on integrating engineering, (molecular and cellular) biology, and imaging disciplines. Recent advances in the field have begun to unravel our understanding of how cells gather information from their surrounding environment, and how they interrogate such information during the cell fate decision making process. Topics include adhesive and integrin-ligand interactions; extracellular influences on cell biology and behavior; cooperative mechanisms of cell-cell and cell-matrix interactions; the mechanobiology of pathological processes; (multi-scale) modeling approaches to describe the complexity or cell-matrix interactions; and quantitative methods required for such experimental and modeling studies.

Molecular Biology of the Cell

Molecular Biology of the Cell PDF Author:
Publisher:
ISBN: 9780815332183
Category : Cells
Languages : en
Pages : 0

Book Description


Cell Mechanics

Cell Mechanics PDF Author: Arnaud Chauvière
Publisher: CRC Press
ISBN: 1420094556
Category : Mathematics
Languages : en
Pages : 484

Book Description
Ubiquitous and fundamental in cell mechanics, multiscale problems can arise in the growth of tumors, embryogenesis, tissue engineering, and more. Cell Mechanics: From Single Scale-Based Models to Multiscale Modeling brings together new insight and research on mechanical, mathematical, physical, and biological approaches for simulating the behavior

Biomateriomics

Biomateriomics PDF Author: Steven W. Cranford
Publisher: Springer Science & Business Media
ISBN: 9400716109
Category : Technology & Engineering
Languages : en
Pages : 446

Book Description
Biomateriomics is the holistic study of biological material systems. While such systems are undoubtedly complex, we frequently encounter similar components -- universal building blocks and hierarchical structure motifs -- which result in a diverse set of functionalities. Similar to the way music or language arises from a limited set of music notes and words, we exploit the relationships between form and function in a meaningful way by recognizing the similarities between Beethoven and bone, or Shakespeare and silk. Through the investigation of material properties, examining fundamental links between processes, structures, and properties at multiple scales and their interactions, materiomics explains system functionality from the level of building blocks. Biomateriomics specifically focuses the analysis of the role of materials in the context of biological processes, the transfer of biological material principles towards biomimetic and bioinspired applications, and the study of interfaces between living and non-living systems. The challenges of biological materials are vast, but the convergence of biology, mathematics and engineering as well as computational and experimental techniques have resulted in the toolset necessary to describe complex material systems, from nano to macro. Applying biomateriomics can unlock Nature’s secret to high performance materials such as spider silk, bone, and nacre, and elucidate the progression and diagnosis or the treatment of diseases. Similarly, it contributes to develop a de novo understanding of biological material processes and to the potential of exploiting novel concepts in innovation, material synthesis and design.

Physics And Biology: From Molecules To Life

Physics And Biology: From Molecules To Life PDF Author: Jean-francois Allemand
Publisher: World Scientific
ISBN: 9814616494
Category : Science
Languages : en
Pages : 199

Book Description
Do you often lose your keys? You will find in this book the best strategy to find them, or at least the one deduced from statistical physics. What is the link with biology? Some proteins use the same strategy to find their target inside a living cell. This example illustrates one of the many links between physics and biology. These links result from an intense research activity in the past years at the interface between those two disciplines. This book describes some of the most recent progresses at this interface: from instrumental progresses used in biology to the mechanical description of a cell, to molecular motors, from brain activity mechanisms to auditory or sensory perception. Many fields are covered from the molecular to the scale at the organ level. A few biological notions are presented in the first chapter that may help to access the biological aspects of the others. In the end this book may interest people passionate in science, from the simple amateur to the advanced researcher level.