Identification of a Novel Fusarium Head Blight Resistance QTL on Chromosome 7A in Tetraploid Wheat PDF Download

Author: Sunil Kumar
Publisher:
ISBN:
Category : Wheat fusarium culmorum head blight
Languages : en
Pages : 158

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Author: Dimanthi Jayatilake
Publisher:
ISBN:
Category :
Languages : en
Pages :

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Fusarium head blight (FHB), caused by Fusarium graminearum, is an important cereal disease in humid and semi-humid wheat growing regions. In recent FHB epidemics in the USA, FHB dramatically reduced wheat yields and grain quality due to mycotoxin contamination. Five types of FHB resistance have been reported, but resistance to disease spread within a spike (Type II) and low deoxynivalenol (DON) accumulation in infected kernels (Type III) have drawn the most attention. A Chinese Spring-Sumai3 chromosome 7A substitution line (CS-SM3-7ADSL) was reported to have a high level of Type II resistance, but quantitative trait locus (QTL) on chromosome 7A has never been mapped. To characterize QTL on chromosome 7A, we developed 191 Chinese Spring-Sumai3-7A chromosome recombinant inbred lines (CRIL) from a cross between Chinese Spring and CS-SM3-7ADSL and evaluated the CRIL in a greenhouse for both types of resistance in three experiments. Two major QTL with Sumai 3 (SM3) origin, conditioning Type II and Type III resistance were mapped in chromosomes 3BS and 7AC. QTL on chromosome 3BS corresponds to Fhb1, previously reported from SM3, whereas 7AC QTL, designated as Fhb5, is a novel QTL identified from SM3 in this study. Fhb5 explains 22% phenotypic variation for Type II resistance and 24% for Type III resistance. Marker Xwmc17 is the closest marker to Fhb5 for both types of resistance. Fhb1 and Fhb5 were additive and together explained 56% variation for Type II and 41% for Type III resistance and resulted in 66% reduction in FHB severity and 84% in DON content. Both QTL showed significant pleiotropy effects on Type II and Type III resistance, suggesting both types of resistance may be controlled by the same gene(s). Haplotype analysis of SM3's parents revealed that Fhb5 originated from Funo, an Italian cultivar. A survey of worldwide germplasm collection of 400 accessions showed that Fhb5 is present mainly in Chinese cultivars, especially in Funo-related accessions. Further, Fhb5 is the second major QTL from SM3 and have potential to be used in improving wheat cultivars for both types of resistance.

Author: Janet M. Lewis
Publisher:
ISBN:
Category : Fusarium diseases of plants
Languages : en
Pages : 352

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Author: Dhananjay Dhokane
Publisher:
ISBN:
Category :
Languages : en
Pages :

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"Fusarium head blight (FHB) is one of the most destructive diseases of wheat worldwide. FHB not only cause serious losses in yield but also significantly deteriorates the quality of grains by contaminating them with health hazardous mycotoxins. Plant resistance is considered as the most sustainable and effective strategy to manage FHB and to reduce the accumulation of mycotoxins. However, lack of effective and precise phenotyping methods and limited understanding of the genetics of FHB resistance has hindered the development of resistant cultivars. Resistance to FHB in wheat is quantitative; therefore more than 100 quantitative trait loci (QTL) have been identified and mapped on all chromosomes in wheat. QTL-Fhb2 is the second major QTL that confers high levels of resistance to the spread of Fusarium graminearum (Fg) within a spike through the rachis. However, the genes underlying the QTL and the mechanisms of resistance are still not elucidated.The phenotyping method was improved by developing a qPCR based protocol to precisely quantify the levels of FHB resistance among genotypes, including bleaching symptoms, following single floret inoculation under greenhouse conditions. We used Fg Tri6 gene specific primers to identify the copy number of Tri6 gene in the samples collected after Fg inoculation. The higher copy numbers of Tri6 correlates to higher Fg biomass and more the susceptibility of the genotype to FHB. Based on the protocol developed, we report that the qPCR based method is more sensitive and precise in discriminating genotypes varying in their levels to FHB resistance compared to disease severity analysis. Further, recombinant inbred lines (RILs), carrying resistant (R-RIL) and susceptible (S-RIL) alleles of QTL-Fhb2 were subjected to metabolome and transcriptome profiling following Fg and distilled water (mock) inoculation, to identify candidate genes localized within the QTL-Fhb2. Integrating metabolomic and transcriptomic datasets, we have identified six candidate genes localized within the QTL-Fhb2. The candidate genes localized within the QTL are, 4-coumarate: CoA ligase (4CL), callose synthase (CS), basic Helix Loop Helix (bHLH041) transcription factor, glutathione S-transferase (GST), ABC transporter-4 (ABC4) and cinnamyl alcohol dehydrogenase (CAD). Based on these findings, we report that the QTL-Fhb2 likely confers FHB resistance through combined effect of cell wall reinforcement and Deoxynivalenol (DON) detoxification.Furthermore, a Ta4CL3 gene localized within the QTL-Fhb2 was functionally characterized using virus induced gene silencing and the resistance functions were proven by analyzing disease severity, fungal biomass and metabolic profiles of silenced and non-silenced control plants. Taken together, we report that Ta4CL3 contributes to resistance against the spread of Fg within a spike likely by reinforcing the cell walls, through the deposition of hydroxycinnamic acid amides, lignin and lignans." --

Author: Abdulrahman Hashimi
Publisher:
ISBN:
Category :
Languages : en
Pages :

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Fusarium head blight (FHB) is one of the devastating wheat diseases worldwide. It reduces not only yield, but also grain quality due to mycotoxins produced by the pathogen Fusarium graminearum. To identify consistent quantitative trait loci (QTLs) for FHB resistance in two US winter wheat 'CI13227' and 'Lyman', we genotyped a double haploid (DH) population from '' x 'CI13227' X 'Lakin' using Illumina wheat 90K single nucleotide polymorphism (SNP) chips and two recombinant inbred line (RIL) populations from 'Lyman'x 'Overley' and 'Lyman'x 'CI13227' using genotyping-by-sequencing (GBS) and evaluated the three populations for FHB type II resistance in greenhouse and field experiments. QTL mapping identified four QTLs on chromosomes 4BS, 5AL, 2DS and 7A in the 'CI13227' x 'Lakin' population, which explained 8-17% of the phenotypic variation in different experiments. The QTL on 4BS from CI13227 showed the largest effect among QTLs detected in the 'CI13227' x 'Lakin' population and were consistently detected in three experiments. 'CI13227' contributed the resistance alleles at QTLs on 2DS and 7A, whereas 'Lakin' contributed the resistance allele at 5AL QTL. The 7A QTL was detected in only one experiment. The QTLs on the chromosomes 4B and 2D showed a high correlation with plant height, suggesting a linked genes or pleiotropic effect of these QTLs. In the 'Lyman'/'Overley' population, six QTLs were located on the chromosomes 1A, 2A, 3A, 1B, 2B and 4B, and explained 5.5 -21% of the phenotypic variations for type II resistance. The QTL on 3A from 'Lyman' showed the largest effects and detected in two greenhouses experiments. Significant correlation was not detected between the PSS and plant height in this population. In the 'Lyman'/'CI13227' population, four QTLs were detected with two QTLs on chromosomes 1A and 7A from 'CI13227' and chromosomes 2B and 3A from 'Lyman' and QTLs on 7A from 'CI13227' and 2B and 3A from 'Lyman' confirmed the results from the previous two populations. Markers for the repeatable QTLs were converted into Kompetitive allele specific PCR (KASP) markers for marker-assisted breeding to pyramid these QTLs in U.S. winter wheat.

Author: Sudheer Kumar
Publisher: CRC Press
ISBN: 0429894074
Category : Science
Languages : en
Pages : 157

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Wheat Blast provides systematic and practical information on wheat blast pathology, summarises research progress and discusses future perspectives based on current understanding of the existing issues. The book explores advance technologies that may help in deciding the path for future research and development for better strategies and techniques to manage the wheat blast disease. It equips readers with basic and applied understanding on the identification of disease, its distribution and chances of further spread in new areas, its potential to cause yield losses to wheat, the conditions that favour disease development, disease prediction modelling, resistance breeding methods and management strategies against wheat blast. Features: Provides comprehensive information on wheat blast pathogen and its management under a single umbrella Covers disease identification and diagnostics which will be helpful to check introduction in new areas Discusses methods and protocol to study the different aspects of the disease such as diagnostics, variability, resistance screening, epiphytotic creation etc. Gives deep insight on the past, present and future outlook of wheat blast research progress This book’s chapters are contributed by experts and pioneers in their respective fields and it provides comprehensive insight with updated findings on wheat blast research. It serves as a valuable reference for researchers, policy makers, students, teachers, farmers, seed growers, traders, and other stakeholders dealing with wheat.

Author: Amanda Leigh Holder
Publisher:
ISBN:
Category : Fusarium diseases of plants
Languages : en
Pages : 162

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Fusarium head blight (FHB) is a disease of small grains caused by the fungal pathogen Fusarium graminearum. FHB poses potential economic losses and health risks due to the accumulation of the mycotoxin deoxynivalenol (DON) on infected seed heads. The objectives of this study are: 1) evaluate soft red winter wheat (SRWW) lines for resistance to FHB in terms of resistance to initial inoculum (incidence); resistance to spread within the head (severity); resistance to DON accumulation; and resistance to Fusarium damaged kernels (FDK), 2) determine the frequency and effect of known FHB resistance genes and quantitative trait loci (QTL), and 3) identify novel resistance loci using a genome wide association (GWA) approach. From 2014-2017, 360 SRWW breeding lines were evaluated in inoculated misted FHB nurseries in Fayetteville and Newport, AR and Winnsboro, LA (2017 only) in a randomized complete block design. At all locations, lines were sown in two row plots, inoculated with F. graminearum infected corn (Zea mays L.) and overhead misted throughout the months of April and May to provide optimal conditions for FHB infection. In addition to visual ratings and DON analysis, lines were screened with KASP® markers linked to known FHB resistance genes, including Fhb1. The known resistance QTL, Qfhb.nc-2B.1 (Bess), on chromosome 3B was significantly associated with a reduction in incidence, severity, and DON accumulation. Genome wide SNP markers generated through genotype by sequencing (GBS) were used to perform GWA in order to identify marker-trait associations for FHB resistance. The GWA analysis identified 58 highly significant SNPs associated with the four disease traits. The most highly significant SNP was found on chromosome 4A and the minor allele was found to significantly reduce incidence by 1.17%. Results from this study will facilitate the development of SRWW cultivars with improved resistance to FHB.

Author: Nosheen Fatima
Publisher:
ISBN:
Category :
Languages : en
Pages :

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Fusarium head blight (FHB) is one of the most damaging diseases in wheat, which impacts both grain yield and quality drastically. Recently, the disease has become more prevalent in the hard winter wheat (HWW) grown areas of the United States including Oklahoma where FHB has not been reported before. Growing resistant cultivars is the most economical and effective strategy for disease management. To dissect quantitative trait loci (QTL) for FHB resistance in a moderately resistant hard winter wheat (HWW) cultivar, Overland, a population of 186 recombinant inbred lines (RILs) was developed from the cross between Overland and Overley, a susceptible HWW cultivar from Kansas. The RILs were evaluated for FHB type II resistance in one field and three greenhouse experiments and genotyped using genotyping-by-sequencing (GBS) markers. Three FHB resistance QTLs were mapped on Chromosomes 4DL, 4AL, and 5BL. The QTL on 4DL was the most consistent one and explained up to 13% of the phenotypic variation for type II resistance and 14 % for low Fusarium damaged kernels (FDK). Two GBS markers closely linked to the 4DL QTL were successfully converted to Kbioscience competitive allelic specific PCR (KASP) assays and can be used in marker-assisted breeding. In breeding, a single QTL may provide only partial resistance and pyramiding of several resistance QTLs in a cultivar can provide more protection in FHB epidemics. Fhb1 is a major QTL for FHB resistance from a Chinese source and Fhb3 is an alien gene from wild rye grass (Leymus racemosus). To study the effects of these QTLs individually and cumulatively in hard winter wheat backgrounds, they were transferred into two HWW cultivars Overland and Jagger. The results show that Fhb1 significantly increased FHB resistance, but Fhb3 did not. Thus, Fhb3 is not an effective gene for improvement of FHB resistance in HWW.

Author: Márta Molnár-Láng
Publisher: Springer
ISBN: 3319234943
Category : Science
Languages : en
Pages : 387

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This book provides an overview of the latest advancements in the field of alien introgression in wheat. The discovery and wide application of molecular genetic techniques including molecular markers, in situ hybridization, and genomics has led to a surge in interspecific and intergeneric hybridization in recent decades. The work begins with the taxonomy of cereals, especially of those species which are potential gene sources for wheat improvement. The text then goes on to cover the origin of wheat, breeding in connection with alien introgressions, and the problems of producing intergeneric hybrids and backcross derivatives. These problems can include crossability, sterility, and unequal chromosome transmission. The work then covers alien introgressions according to the related species used, as well as new results in the field of genomics of wild wheat relatives and introgressions.

Author:
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Category :
Languages : en
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A dominant powdery mildew resistance gene transferred to the hexaploid germplasm line NC99BGTAG11 from T. timopheevii subsp. armeniacum was mapped distally on the long arm of chromosome 7A. Differential reactions were observed between the resistance gene in NC99BGTAG11, the resistance gene in NC96BGTA4, and the alleles of the Pm1 locus that are also located on chromosome arm 7AL. Observed segregation in F2:3 lines from the cross NC99BGTAG11 x Axminster (Pm1a) and from the cross NC99BGTAG11 x NC96BGTA4 demonstrate that germplasm line NC99BGTAG11 carries a novel powdery mildew resistance gene, which is now designated as Pm37. Analyses of the population with molecular markers indicate that Pm37 is located 16 cM proximal to the Pm1 complex. However, further identification of linked markers is necessary to resolve the location of the resistance gene in NC96BGTA4. Simple sequence repeat (SSR) markers Xgwm332 and Xwmc790 were located 0.5 cM proximal and distal, respectively, to Pm37. Two new EST-derived STS markers were located distal to Pm37 and one marker was closely linked to the Pm1a region. Quantitative trait loci (QTL) for resistance to Fusarium head blight (FHB) have been mapped in the Chinese cv. Sumai 3 and its derivatives (on 3BS, 5AS, and 6BS), in Wuhan 1 (on 2D and 4B), and in the soft winter (SW) wheat cv. Ernie (on 4BL, 5A, and 3BSc). In this study, we selected 48 molecular markers near or at FHB resistance QTL mapped in Sumai 3, Wuhan 1 and Ernie to haplotype 245 soft winter wheat lines and to evaluate the use of these markers for marker-assisted selection (MAS). Based on the marker data, entries were grouped into 6 main clusters that generally represented breeding programs and/or geographic origin. The Chinese cultivars having the Fhb1 resistance gene were grouped separately from all other entries. The Xsts3B-256 and Xgwm533 markers can be clearly used to identify lines with the Fhb1 resistance gene. The haplotypes at these loci, along with the 3BSc region.