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High-resolution Diffusion MRI of Targeted Regions

High-resolution Diffusion MRI of Targeted Regions PDF Author: Emine Ülkü Sarıtaş
Publisher: Stanford University
ISBN:
Category :
Languages : en
Pages : 131

Book Description
Diffusion magnetic resonance imaging (MRI) is an MRI method that provides information about random microscopic motion of water molecules in biological tissues. In addition to offering a higher sensitivity for the diagnosis of white matter diseases such as stroke and multiple sclerosis, and producing connectivity maps of the brain, it is a promising prognostic tool in the assessment and treatment response monitoring of cancer in the body. While high in-plane resolution is desirable for all diffusion MRI applications, it is particularly essential for imaging of small structures. Unfortunately, the performance of diffusion MRI techniques is often hindered by a variety of factors including susceptibility variations, field inhomogeneities and bulk physiologic motion. This thesis presents a reduced field-of-view (FOV) single-shot echo-planar imaging (ss-EPI) method to address these problems and enable high-resolution diffusion MRI of targeted regions. The proposed method utilizes a two-dimensional (2D) echo-planar radio-frequency (RF) excitation pulse to achieve a sharp reduced-FOV profile, while still allowing contiguous multi-slice imaging and suppressing the fat signal. Extensive clinical evaluation of the technique demonstrated that sub-mm diffusion-weighted imaging (DWI) on human spinal cords is feasible with minimal artifacts. High-resolution fiber tractography of the spinal cord successfully visualized the connectivity between the cord and the medulla oblongata, delineating internal structures such as gray/white matter. In vivo DWI of the larynx, breast and prostate validated the effectiveness of this technique in providing detailed depiction of the morphology outside the central nervous system. When the exponential diffusion attenuation is combined with high spatial resolution, DWI may suffer from poor signal-to-noise ratio (SNR). The last part of this thesis presents an optimization strategy for the DWI parameters as a function of the imaging SNR. Specifically, the optimum b-value is shown to be a monotonically increasing function of the imaging SNR, with a convergence asymptote identical to the previously proposed values in literature. The effects of T2 relaxation are also incorporated for a more accurate optimization. In vitro and in vivo experiments demonstrated reduced error in ADC estimations and improved SNR in the diffusion-weighted images with the proposed technique.

High-resolution Diffusion MRI of Targeted Regions

High-resolution Diffusion MRI of Targeted Regions PDF Author: Emine Ülkü Sarıtaş
Publisher: Stanford University
ISBN:
Category :
Languages : en
Pages : 131

Book Description
Diffusion magnetic resonance imaging (MRI) is an MRI method that provides information about random microscopic motion of water molecules in biological tissues. In addition to offering a higher sensitivity for the diagnosis of white matter diseases such as stroke and multiple sclerosis, and producing connectivity maps of the brain, it is a promising prognostic tool in the assessment and treatment response monitoring of cancer in the body. While high in-plane resolution is desirable for all diffusion MRI applications, it is particularly essential for imaging of small structures. Unfortunately, the performance of diffusion MRI techniques is often hindered by a variety of factors including susceptibility variations, field inhomogeneities and bulk physiologic motion. This thesis presents a reduced field-of-view (FOV) single-shot echo-planar imaging (ss-EPI) method to address these problems and enable high-resolution diffusion MRI of targeted regions. The proposed method utilizes a two-dimensional (2D) echo-planar radio-frequency (RF) excitation pulse to achieve a sharp reduced-FOV profile, while still allowing contiguous multi-slice imaging and suppressing the fat signal. Extensive clinical evaluation of the technique demonstrated that sub-mm diffusion-weighted imaging (DWI) on human spinal cords is feasible with minimal artifacts. High-resolution fiber tractography of the spinal cord successfully visualized the connectivity between the cord and the medulla oblongata, delineating internal structures such as gray/white matter. In vivo DWI of the larynx, breast and prostate validated the effectiveness of this technique in providing detailed depiction of the morphology outside the central nervous system. When the exponential diffusion attenuation is combined with high spatial resolution, DWI may suffer from poor signal-to-noise ratio (SNR). The last part of this thesis presents an optimization strategy for the DWI parameters as a function of the imaging SNR. Specifically, the optimum b-value is shown to be a monotonically increasing function of the imaging SNR, with a convergence asymptote identical to the previously proposed values in literature. The effects of T2 relaxation are also incorporated for a more accurate optimization. In vitro and in vivo experiments demonstrated reduced error in ADC estimations and improved SNR in the diffusion-weighted images with the proposed technique.

Brain Network Analysis

Brain Network Analysis PDF Author: Moo K. Chung
Publisher: Cambridge University Press
ISBN: 110718486X
Category : Computers
Languages : en
Pages : 343

Book Description
This coherent mathematical and statistical approach aimed at graduate students incorporates regression and topology as well as graph theory.

Diffusion MRI

Diffusion MRI PDF Author: Derek K Jones
Publisher: Oxford University Press
ISBN: 0199708703
Category : Science
Languages : en
Pages : 784

Book Description
Professor Derek Jones, a world authority on diffusion MRI, has assembled most of the world's leading scientists and clinicians developing and applying diffusion MRI to produce an authorship list that reads like a "Who's Who" of the field and an essential resource for those working with diffusion MRI. Destined to be a modern classic, this definitive and richly illustrated work covers all aspects of diffusion MRI from basic theory to clinical application. Oxford Clinical Neuroscience is a comprehensive, cross-searchable collection of resources offering quick and easy access to eleven of Oxford University Press's prestigious neuroscience texts. Joining Oxford Medicine Online these resources offer students, specialists and clinical researchers the best quality content in an easy-to-access format.

Introduction to Diffusion Tensor Imaging

Introduction to Diffusion Tensor Imaging PDF Author: Susumu Mori
Publisher: Academic Press
ISBN: 0123984076
Category : Medical
Languages : en
Pages : 141

Book Description
The concepts behind diffusion tensor imaging (DTI) are commonly difficult to grasp, even for magnetic resonance physicists. To make matters worse, a many more complex higher-order methods have been proposed over the last few years to overcome the now well-known deficiencies of DTI. In Introduction to Diffusion Tensor Imaging: And Higher Order Models, these concepts are explained through extensive use of illustrations rather than equations to help readers gain a more intuitive understanding of the inner workings of these techniques. Emphasis is placed on the interpretation of DTI images and tractography results, the design of experiments, and the types of application studies that can be undertaken. Diffusion MRI is a very active field of research, and theories and techniques are constantly evolving. To make sense of this constantly shifting landscape, there is a need for a textbook that explains the concepts behind how these techniques work in a way that is easy and intuitive to understand—Introduction to Diffusion Tensor Imaging fills this gap. - Extensive use of illustrations to explain the concepts of diffusion tensor imaging and related methods - Easy to understand, even without a background in physics - Includes sections on image interpretation, experimental design, and applications - Up-to-date information on more recent higher-order models, which are increasingly being used for clinical applications

Quantitative Magnetic Resonance Imaging

Quantitative Magnetic Resonance Imaging PDF Author: Nicole Seiberlich
Publisher: Academic Press
ISBN: 0128170581
Category : Computers
Languages : en
Pages : 1094

Book Description
Quantitative Magnetic Resonance Imaging is a 'go-to' reference for methods and applications of quantitative magnetic resonance imaging, with specific sections on Relaxometry, Perfusion, and Diffusion. Each section will start with an explanation of the basic techniques for mapping the tissue property in question, including a description of the challenges that arise when using these basic approaches. For properties which can be measured in multiple ways, each of these basic methods will be described in separate chapters. Following the basics, a chapter in each section presents more advanced and recently proposed techniques for quantitative tissue property mapping, with a concluding chapter on clinical applications. The reader will learn: - The basic physics behind tissue property mapping - How to implement basic pulse sequences for the quantitative measurement of tissue properties - The strengths and limitations to the basic and more rapid methods for mapping the magnetic relaxation properties T1, T2, and T2* - The pros and cons for different approaches to mapping perfusion - The methods of Diffusion-weighted imaging and how this approach can be used to generate diffusion tensor - maps and more complex representations of diffusion - How flow, magneto-electric tissue property, fat fraction, exchange, elastography, and temperature mapping are performed - How fast imaging approaches including parallel imaging, compressed sensing, and Magnetic Resonance - Fingerprinting can be used to accelerate or improve tissue property mapping schemes - How tissue property mapping is used clinically in different organs - Structured to cater for MRI researchers and graduate students with a wide variety of backgrounds - Explains basic methods for quantitatively measuring tissue properties with MRI - including T1, T2, perfusion, diffusion, fat and iron fraction, elastography, flow, susceptibility - enabling the implementation of pulse sequences to perform measurements - Shows the limitations of the techniques and explains the challenges to the clinical adoption of these traditional methods, presenting the latest research in rapid quantitative imaging which has the possibility to tackle these challenges - Each section contains a chapter explaining the basics of novel ideas for quantitative mapping, such as compressed sensing and Magnetic Resonance Fingerprinting-based approaches

Atlas of the Human Brainstem

Atlas of the Human Brainstem PDF Author: George Paxinos
Publisher: Elsevier
ISBN: 0080925219
Category : Science
Languages : en
Pages : 150

Book Description
Work on the human brainstem has been impeded by the unavailability of a comprehensive diagrammatic and photographic atlas. In the authors' preliminary work on the morphology of the human brainstem (The Human Nervous System, 1990), Paxinos et al demonstrated that it is possible to use chemoarchitecture to establish a number of human homologs in structures known to exist in the rat, the most extensively studied species. Now, with the first detailed atlas on the human brainstem in more than forty years, the authors present an accurate, comprehensive, and convenient reference for students, researchers, and pathologists. Key Features * The first detailed atlas on the human brainstem in more than forty years * Delineated as accurately as The Rat Brain in Stereotaxic Coordinates, Second Edition (Paxinos/Watson, 1986), the most cited book in neuroscience * Based on a single brain from a 59-year-old male with no medical history of neurological or psychiatric illness * Represents all areas of the medulla, pons, and midbrain in the plane transverse to the longitudinal axis of the brainstem * Consists of 64 plates and 64 accompanying diagrams with an interplate distance of half a millimeter * The photographs are of Nissl and acetylcholinesterase (AChE) stained sections at alternate levels * Establishes systematically the human homologs to nuclei identified in the brainstem of the rat Reviewed by leading neuroanatomists * An accurate and convenient guide for students, researchers, and pathologists

Anisotropy Across Fields and Scales

Anisotropy Across Fields and Scales PDF Author: Evren Özarslan
Publisher: Springer Nature
ISBN: 3030562158
Category : Algebra
Languages : en
Pages : 284

Book Description
This open access book focuses on processing, modeling, and visualization of anisotropy information, which are often addressed by employing sophisticated mathematical constructs such as tensors and other higher-order descriptors. It also discusses adaptations of such constructs to problems encountered in seemingly dissimilar areas of medical imaging, physical sciences, and engineering. Featuring original research contributions as well as insightful reviews for scientists interested in handling anisotropy information, it covers topics such as pertinent geometric and algebraic properties of tensors and tensor fields, challenges faced in processing and visualizing different types of data, statistical techniques for data processing, and specific applications like mapping white-matter fiber tracts in the brain. The book helps readers grasp the current challenges in the field and provides information on the techniques devised to address them. Further, it facilitates the transfer of knowledge between different disciplines in order to advance the research frontiers in these areas. This multidisciplinary book presents, in part, the outcomes of the seventh in a series of Dagstuhl seminars devoted to visualization and processing of tensor fields and higher-order descriptors, which was held in Dagstuhl, Germany, on October 28-November 2, 2018.

Diffusion MRI Outside the Brain

Diffusion MRI Outside the Brain PDF Author: Antonio Luna
Publisher: Springer Science & Business Media
ISBN: 364221052X
Category : Medical
Languages : en
Pages : 416

Book Description
Recent advances in MR technology permit the application of diffusion MRI outside of the brain. In this book, the authors present cases drawn from daily clinical practice to illustrate the role of diffusion sequences, along with other morphological and functional MRI information, in the work-up of a variety of frequently encountered oncological and non-oncological diseases. Breast, musculoskeletal, whole-body, and other applications are covered in detail, with careful explanation of the pros and cons of diffusion MRI in each circumstance. Quantification and post-processing are discussed, and advice is provided on how to acquire state of the art images, and avoid artifacts, when using 1.5- and 3-T magnets. Applications likely to emerge in the near future, such as for screening, are also reviewed. The practical approach adopted by the authors, combined with the wealth of high-quality illustrations, ensure that this book will be of great value to practitioners.

Make Life Visible

Make Life Visible PDF Author: Yoshiaki Toyama
Publisher: Springer Nature
ISBN: 9811379084
Category : Medical
Languages : en
Pages : 285

Book Description
This open access book describes marked advances in imaging technology that have enabled the visualization of phenomena in ways formerly believed to be completelyimpossible. These technologies have made major contributions to the elucidation of the pathology of diseases as well as to their diagnosis and therapy. The volume presents various studies from molecular imaging to clinical imaging. It also focuses on innovative, creative, advanced research that gives full play to imaging technology inthe broad sense, while exploring cross-disciplinary areas in which individual research fields interact and pursuing the development of new techniques where they fuse together. The book is separated into three parts, the first of which addresses the topic of visualizing and controlling molecules for life. Th e second part is devoted to imaging of disease mechanisms, while the final part comprises studies on the application of imaging technologies to diagnosis and therapy. Th e book contains the proceedings of the 12th Uehara International Symposium 2017, “Make Life Visible” sponsored by the Uehara Memorial Foundation and held from June 12 to 14, 2017. It is written by leading scientists in the field and is an open access publication under a CC BY 4.0 license.

Fundamentals of Brain Network Analysis

Fundamentals of Brain Network Analysis PDF Author: Alex Fornito
Publisher: Academic Press
ISBN: 0124081185
Category : Medical
Languages : en
Pages : 496

Book Description
Fundamentals of Brain Network Analysis is a comprehensive and accessible introduction to methods for unraveling the extraordinary complexity of neuronal connectivity. From the perspective of graph theory and network science, this book introduces, motivates and explains techniques for modeling brain networks as graphs of nodes connected by edges, and covers a diverse array of measures for quantifying their topological and spatial organization. It builds intuition for key concepts and methods by illustrating how they can be practically applied in diverse areas of neuroscience, ranging from the analysis of synaptic networks in the nematode worm to the characterization of large-scale human brain networks constructed with magnetic resonance imaging. This text is ideally suited to neuroscientists wanting to develop expertise in the rapidly developing field of neural connectomics, and to physical and computational scientists wanting to understand how these quantitative methods can be used to understand brain organization. - Winner of the 2017 PROSE Award in Biomedicine & Neuroscience and the 2017 British Medical Association (BMA) Award in Neurology - Extensively illustrated throughout by graphical representations of key mathematical concepts and their practical applications to analyses of nervous systems - Comprehensively covers graph theoretical analyses of structural and functional brain networks, from microscopic to macroscopic scales, using examples based on a wide variety of experimental methods in neuroscience - Designed to inform and empower scientists at all levels of experience, and from any specialist background, wanting to use modern methods of network science to understand the organization of the brain