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Author: Donald Adjeroh Publisher: Springer Science & Business Media ISBN: 038778909X Category : Computers Languages : en Pages : 353
Book Description
The Burrows-Wheeler Transform is one of the best lossless compression me- ods available. It is an intriguing — even puzzling — approach to squeezing redundancy out of data, it has an interesting history, and it has applications well beyond its original purpose as a compression method. It is a relatively late addition to the compression canon, and hence our motivation to write this book, looking at the method in detail, bringing together the threads that led to its discovery and development, and speculating on what future ideas might grow out of it. The book is aimed at a wide audience, ranging from those interested in learning a little more than the short descriptions of the BWT given in st- dard texts, through to those whose research is building on what we know about compression and pattern matching. The ?rst few chapters are a careful description suitable for readers with an elementary computer science ba- ground (and these chapters have been used in undergraduate courses), but later chapters collect a wide range of detailed developments, some of which are built on advanced concepts from a range of computer science topics (for example, some of the advanced material has been used in a graduate c- puter science course in string algorithms). Some of the later explanations require some mathematical sophistication, but most should be accessible to those with a broad background in computer science.
Author: Donald Adjeroh Publisher: Springer Science & Business Media ISBN: 038778909X Category : Computers Languages : en Pages : 353
Book Description
The Burrows-Wheeler Transform is one of the best lossless compression me- ods available. It is an intriguing — even puzzling — approach to squeezing redundancy out of data, it has an interesting history, and it has applications well beyond its original purpose as a compression method. It is a relatively late addition to the compression canon, and hence our motivation to write this book, looking at the method in detail, bringing together the threads that led to its discovery and development, and speculating on what future ideas might grow out of it. The book is aimed at a wide audience, ranging from those interested in learning a little more than the short descriptions of the BWT given in st- dard texts, through to those whose research is building on what we know about compression and pattern matching. The ?rst few chapters are a careful description suitable for readers with an elementary computer science ba- ground (and these chapters have been used in undergraduate courses), but later chapters collect a wide range of detailed developments, some of which are built on advanced concepts from a range of computer science topics (for example, some of the advanced material has been used in a graduate c- puter science course in string algorithms). Some of the later explanations require some mathematical sophistication, but most should be accessible to those with a broad background in computer science.
Author: Gonzalo Navarro Publisher: Cambridge University Press ISBN: 9780521813075 Category : Computers Languages : en Pages : 236
Book Description
Presents recently developed algorithms for searching for simple, multiple and extended strings, regular expressions, exact and approximate matches.
Author: Dan Hirschberg Publisher: Springer Science & Business Media ISBN: 9783540612582 Category : Computers Languages : en Pages : 408
Book Description
This book constitutes the refereed proceedings of the 7th Annual Symposium on Combinatorial Pattern Matching, CPM '96, held in Laguna Beach, California, USA, in June 1996. The 26 revised full papers included were selected from a total of 48 submissions; also included are two invited papers. Combinatorial pattern matching has become a full-fledged area of algorithmics with important applications in recent years. The book addresses all relevant aspects of combinatorial pattern matching and its importance in information retrieval, pattern recognition, compiling, data compression, program analysis, and molecular biology and thus describes the state of the art in the area.
Author: Alexander S. Kulikov Publisher: Springer ISBN: 3319075667 Category : Computers Languages : en Pages : 301
Book Description
This book constitutes the refereed proceedings of the 25th Annual Symposium on Combinatorial Pattern Matching, CPM 2014, held in Moscow, Russia, in June 2014. The 28 revised full papers presented together with 5 invited talks were carefully reviewed and selected from 54 submissions. The papers address issues of searching and matching strings and more complicated patterns such as trees; regular expressions; graphs; point sets; and arrays. The goal is to derive combinatorial properties of such structures and to exploit these properties in order to achieve superior performance for the corresponding computational problems. The meeting also deals with problems in computational biology; data compression and data mining; coding; information retrieval; natural language processing; and pattern recognition.
Author: Alberto H.F. Laender Publisher: Springer ISBN: 3540457356 Category : Computers Languages : en Pages : 351
Book Description
This volume of the Lecture Notes in Computer Science series provides a c- prehensive, state-of-the-art survey of recent advances in string processing and information retrieval. It includes invited and research papers presented at the 9th International Symposium on String Processing and Information Retrieval, SPIRE2002, held in Lisbon, Portugal. SPIREhas its origins in the South Am- ican Workshop on String Processing which was ?rst held in Belo Horizonte, Brazil, in 1993. Starting in 1998, the focus of the workshop was broadened to include the area of information retrieval due to its increasing relevance and its inter-relationship with the area of string processing. The call for papers for SPIRE2002 resulted in the submission of 54 papers from researchers around the world. Of these, 19 were selected for inclusion in the program (an acceptance rate of 35%). In addition, the Program Committee decided to accept six other papers, considered as describing interesting ongoing research, in the form of short papers. The authors of these 25 papers came from 18 di?erent countries (Argentina, Australia, Brazil, Canada, Czech Republic, Chile, Colombia, Finland, France, Germany, Japan, Italy, Mexico, Saudi Arabia, Switzerland, Spain, United Kingdom, and USA).
Author: Zvi Galil Publisher: Lecture Notes in Computer Science ISBN: Category : Computers Languages : en Pages : 424
Book Description
This volume presents the proceedings of the 6th International Symposium on Combinatorial Pattern Matching, CPM '95, held in Espoo, Finland in July 1995. CPM addresses issues of searching and matching strings and more complicated patterns such as trees, regular expressions, extended expressions, etc. The aim is to derive non-trivial combinatorial properties in order to improve the performance of the corresponding computational problems. This volume presents 27 selected refereed full research papers and two invited papers; it addresses all current aspects of CPM and its applications such as the design and analysis of algorithms for pattern matching problems in strings, graphs, and hypertexts, as well as in biological sequences and molecules.
Author: Maxime Crochemore Publisher: World Scientific ISBN: 9814489875 Category : Computers Languages : en Pages : 322
Book Description
The term “stringology” is a popular nickname for text algorithms, or algorithms on strings. This book deals with the most basic algorithms in the area. Most of them can be viewed as “algorithmic jewels” and deserve reader-friendly presentation. One of the main aims of the book is to present several of the most celebrated algorithms in a simple way by omitting obscuring details and separating algorithmic structure from combinatorial theoretical background. The book reflects the relationships between applications of text-algorithmic techniques and the classification of algorithms according to the measures of complexity considered. The text can be viewed as a parade of algorithms in which the main purpose is to discuss the foundations of the algorithms and their interconnections. One can partition the algorithmic problems discussed into practical and theoretical problems. Certainly, string matching and data compression are in the former class, while most problems related to symmetries and repetitions in texts are in the latter. However, all the problems are interesting from an algorithmic point of view and enable the reader to appreciate the importance of combinatorics on words as a tool in the design of efficient text algorithms.In most textbooks on algorithms and data structures, the presentation of efficient algorithms on words is quite short as compared to issues in graph theory, sorting, searching, and some other areas. At the same time, there are many presentations of interesting algorithms on words accessible only in journals and in a form directed mainly at specialists. This book fills the gap in the book literature on algorithms on words, and brings together the many results presently dispersed in the masses of journal articles. The presentation is reader-friendly; many examples and about two hundred figures illustrate nicely the behaviour of otherwise very complex algorithms.
Author: Charu C. Aggarwal Publisher: Springer Science & Business Media ISBN: 1441960457 Category : Computers Languages : en Pages : 623
Book Description
Managing and Mining Graph Data is a comprehensive survey book in graph management and mining. It contains extensive surveys on a variety of important graph topics such as graph languages, indexing, clustering, data generation, pattern mining, classification, keyword search, pattern matching, and privacy. It also studies a number of domain-specific scenarios such as stream mining, web graphs, social networks, chemical and biological data. The chapters are written by well known researchers in the field, and provide a broad perspective of the area. This is the first comprehensive survey book in the emerging topic of graph data processing. Managing and Mining Graph Data is designed for a varied audience composed of professors, researchers and practitioners in industry. This volume is also suitable as a reference book for advanced-level database students in computer science and engineering.
Author: Gabriel Valiente Publisher: CRC Press ISBN: 1420069748 Category : Computers Languages : en Pages : 370
Book Description
Emphasizing the search for patterns within and between biological sequences, trees, and graphs, Combinatorial Pattern Matching Algorithms in Computational Biology Using Perl and R shows how combinatorial pattern matching algorithms can solve computational biology problems that arise in the analysis of genomic, transcriptomic, proteomic, metabolomic
Author: Donald Adjeroh
Author: Donald Adjeroh
Author: Gonzalo Navarro
Author: Dan Hirschberg
Author: Alexander S. Kulikov
Author: Alberto H.F. Laender
Author: M. Karpinski
Author: Zvi Galil
Author: Maxime Crochemore
Author: Charu C. Aggarwal
Author: Gabriel Valiente