Systems-Level Modelling of Microbial Communities PDF Download

Author: Aarthi Ravikrishnan
Publisher: CRC Press
ISBN: 0429946074
Category : Computers
Languages : en
Pages : 101

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Book Description
Overview of ecological principles underlying natural and synthetic microbial communities Techniques to infer relationships in microbial communities from metagenomic sequences Detailed account of constraint-based methods to decipher metabolic interactions in microbial communities Case studies to illustrate applications of various community modelling approaches Brief outline of experimental methods to understand and characterise microbial communities

Author: Aarthi Ravikrishnan
Publisher: CRC Press
ISBN: 0429946066
Category : Computers
Languages : en
Pages : 77

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Book Description
Systems-Level Modelling of Microbial Communities: Theory and Practice introduces various aspects of modelling microbial communities and presents a detailed overview of the computational methods which have been developed in this area. This book is aimed at researchers in the field of computational/systems biology as well as biologists/experimentalists studying microbial communities, who are keen on embracing the concepts of computational modelling. The primary focus of this book is on methods for modelling interactions between micro-organisms in a community, with special emphasis on constraint-based and network-based modelling techniques. A brief overview of population- and agent-based modelling is also presented. Lastly, it covers the experimental methods to understand microbial communities, and provides an outlook on how the field may evolve in the coming years.

Author: Karthik Raman
Publisher: CRC Press
ISBN: 0429944527
Category : Computers
Languages : en
Pages : 359

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Book Description
This book delivers a comprehensive and insightful account of applying mathematical modelling approaches to very large biological systems and networks—a fundamental aspect of computational systems biology. The book covers key modelling paradigms in detail, while at the same time retaining a simplicity that will appeal to those from less quantitative fields. Key Features: A hands-on approach to modelling Covers a broad spectrum of modelling, from static networks to dynamic models and constraint-based models Thoughtful exercises to test and enable understanding of concepts State-of-the-art chapters on exciting new developments, like community modelling and biological circuit design Emphasis on coding and software tools for systems biology Companion website featuring lecture videos, figure slides, codes, supplementary exercises, further reading, and appendices: https://ramanlab.github.io/SysBioBook/ An Introduction to Computational Systems Biology: Systems-Level Modelling of Cellular Networks is highly multi-disciplinary and will appeal to biologists, engineers, computer scientists, mathematicians and others.

Author:
Publisher:
ISBN:
Category : Genomics
Languages : en
Pages : 320

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Book Description

Author: Brian Henderson
Publisher: John Wiley & Sons
ISBN: 1405122196
Category : Medical
Languages : en
Pages : 465

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Book Description
This book provides a systems-based approach to periodontology and offers a scientific roadmap of the interactions which can lead to periodontal disease.

Author: Jens Nielsen
Publisher: John Wiley & Sons
ISBN: 3527335587
Category : Computers
Languages : en
Pages : 435

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Book Description
Comprehensive coverage of the many different aspects of systems biology, resulting in an excellent overview of the experimental and computational approaches currently in use to study biological systems. Each chapter represents a valuable introduction to one specific branch of systems biology, while also including the current state of the art and pointers to future directions. Following different methods for the integrative analysis of omics data, the book goes on to describe techniques that allow for the direct quantification of carbon fluxes in large metabolic networks, including the use of 13C labelled substrates and genome-scale metabolic models. The latter is explained on the basis of the model organism Escherichia coli as well as the human metabolism. Subsequently, the authors deal with the application of such techniques to human health and cell factory engineering, with a focus on recent progress in building genome-scale models and regulatory networks. They highlight the importance of such information for specific biological processes, including the ageing of cells, the immune system and organogenesis. The book concludes with a summary of recent advances in genome editing, which have allowed for precise genetic modifications, even with the dynamic control of gene expression. This is part of the Advances Biotechnology series, covering all pertinent aspects of the field with each volume prepared by eminent scientists who are experts on the topic in question.

Author: Brian Douglas Robertson
Publisher:
ISBN: 9781912530458
Category : Biological models
Languages : en
Pages : 0

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Book Description
This volume contains cutting-edge reviews by world-leading experts on the systems biology of microorganisms. As well as covering theoretical approaches and mathematical modelling this book includes case studies on single microbial species of bacteria and archaea, and explores the systems analysis of microbial phenomena such as chemotaxis and phagocytosis. Topics covered include mathematical models for systems biology, systems biology of Escherichia coli metabolism, bacterial chemotaxis, systems biology of infection, host-microbe interactions, phagocytosis, system-level study of metabolism in M.

Author: Hyun-Seob Song
Publisher: MDPI
ISBN: 3038429759
Category : Science
Languages : en
Pages : 295

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Book Description
This book is a printed edition of the Special Issue "Microbial Community Modeling: Prediction of Microbial Interactions and Community Dynamics" that was published in Processes

Author:
Publisher: Academic Press
ISBN: 0128110953
Category : Science
Languages : en
Pages : 690

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Book Description
Advances in Ecological Research is one of the most successful series in the highly competitive field of ecology. This thematic volume focuses on large scale ecology, publishing important reviews that contribute to our understanding of the field. - Presents the most updated information on the field of large scale ecology, publishing topical and important reviews - Provides all information that relates to a thorough understanding of the field - Includes data on physiology, populations, and communities of plants and animals

Author: Jean F. Challacombe
Publisher: CRC Press
ISBN: 1000260542
Category : Medical
Languages : en
Pages : 116

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Book Description
Metabolic systems engineering combines the tools and approaches of systems biology, synthetic biology, and evolutionary engineering. This book reviews studies on metabolism, from the earliest work of Lavoisier and Buchner to current cutting-edge research in metabolic systems engineering. This technology has been used in bioengineering applications to create high-performing microbes and plants that produce important chemicals, pharmaceuticals, crops, and other natural products. Current applications include optimizing metabolic pathways to enhance degradation of biomass for biofuel production and accelerated processing of environmental waste products and contaminants. The book includes examples to illustrate the applications of this technology in the optimization of metabolic pathways to create robust industrial strains as well as in the engineering of biological processes involving health and diseases of humans, animals, and plants. Written by a seasoned computational biologist with many years of experience in genomics, bioinformatics, and systems biology, this book will appeal to anyone interested in metabolic systems analysis and metabolic pathway engineering.