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Author: Yu Gao Publisher: ISBN: Category : Genetics Languages : en Pages : 100
Book Description
A large-scale multiple testing problem simultaneously tests thousands or even millions of null hypotheses, and it is widely used in different fields, for example genetics and astronomy. An error rate serves as a measure of the performance of a testing procedure. The use of the family-wise error rate can accommodate any dependence between hypotheses, but it is often overly conservative and has limited detection power.The false discovery rate is more powerful, however not as widely used due to the requirement of independence and other reasons. In this thesis, we develop statistical methods for large-scale multiple testing problems in pharmacovigilance and genetic studies, and adopt the false discovery rate to improve the detection power by tacking mixed challenges.
Author: Yu Gao Publisher: ISBN: Category : Genetics Languages : en Pages : 100
Book Description
A large-scale multiple testing problem simultaneously tests thousands or even millions of null hypotheses, and it is widely used in different fields, for example genetics and astronomy. An error rate serves as a measure of the performance of a testing procedure. The use of the family-wise error rate can accommodate any dependence between hypotheses, but it is often overly conservative and has limited detection power.The false discovery rate is more powerful, however not as widely used due to the requirement of independence and other reasons. In this thesis, we develop statistical methods for large-scale multiple testing problems in pharmacovigilance and genetic studies, and adopt the false discovery rate to improve the detection power by tacking mixed challenges.
Author: Xinping Cui Publisher: CRC Press ISBN: 0429633882 Category : Mathematics Languages : en Pages : 418
Book Description
Written by experts that include originators of some key ideas, chapters in the Handbook of Multiple Testing cover multiple comparison problems big and small, with guidance toward error rate control and insights on how principles developed earlier can be applied to current and emerging problems. Some highlights of the coverages are as follows. Error rate control is useful for controlling the incorrect decision rate. Chapter 1 introduces Tukey's original multiple comparison error rates and point to how they have been applied and adapted to modern multiple comparison problems as discussed in the later chapters. Principles endure. While the closed testing principle is more familiar, Chapter 4 shows the partitioning principle can derive confidence sets for multiple tests, which may become important as the profession goes beyond making decisions based on p-values. Multiple comparisons of treatment efficacy often involve multiple doses and endpoints. Chapter 12 on multiple endpoints explains how different choices of endpoint types lead to different multiplicity adjustment strategies, while Chapter 11 on the MCP-Mod approach is particularly useful for dose-finding. To assess efficacy in clinical trials with multiple doses and multiple endpoints, the reader can see the traditional approach in Chapter 2, the Graphical approach in Chapter 5, and the multivariate approach in Chapter 3. Personalized/precision medicine based on targeted therapies, already a reality, naturally leads to analysis of efficacy in subgroups. Chapter 13 draws attention to subtle logical issues in inferences on subgroups and their mixtures, with a principled solution that resolves these issues. This chapter has implication toward meeting the ICHE9R1 Estimands requirement. Besides the mere multiple testing methodology itself, the handbook also covers related topics like the statistical task of model selection in Chapter 7 or the estimation of the proportion of true null hypotheses (or, in other words, the signal prevalence) in Chapter 8. It also contains decision-theoretic considerations regarding the admissibility of multiple tests in Chapter 6. The issue of selected inference is addressed in Chapter 9. Comparison of responses can involve millions of voxels in medical imaging or SNPs in genome-wide association studies (GWAS). Chapter 14 and Chapter 15 provide state of the art methods for large scale simultaneous inference in these settings.
Author: Xiaoyu Dai Publisher: ISBN: Category : Electronic dissertations Languages : en Pages : 104
Book Description
In the last decade, motivated by a variety of applications in medicine, bioinformatics, genomics, brain imaging, etc., a growing amount of statistical research has been devoted to large-scale multiple testing, where thousands or even greater numbers of tests are conducted simultaneously. However, due to the complexity of real data sets, the assumptions of many existing multiple testing procedures, e.g. that tests are independent and have continuous null distributions of p-values, may not hold. This poses limitations in their performances such as low detection power and inflated false discovery rate (FDR). In this dissertation, we study how to better proceed the multiple testing problems under complex data structures. In Chapter 2, we study the multiple testing with discrete test statistics. In Chapter 3, we study the discrete multiple testing with prior ordering information incorporated. In Chapter 4, we study the multiple testing under complex dependency structure. We propose novel procedures under each scenario, based on the marginal critical functions (MCFs) of randomized tests, the conditional random field (CRF) or the deep neural network (DNN). The theoretical properties of our procedures are carefully studied, and their performances are evaluated through various simulations and real applications with the analysis of genetic data from next-generation sequencing (NGS) experiments.
Author: Tejas Desai Publisher: Springer Science & Business Media ISBN: 1461464439 Category : Mathematics Languages : en Pages : 60
Book Description
In statistics, the Behrens–Fisher problem is the problem of interval estimation and hypothesis testing concerning the difference between the means of two normally distributed populations when the variances of the two populations are not assumed to be equal, based on two independent samples. In his 1935 paper, Fisher outlined an approach to the Behrens-Fisher problem. Since high-speed computers were not available in Fisher’s time, this approach was not implementable and was soon forgotten. Fortunately, now that high-speed computers are available, this approach can easily be implemented using just a desktop or a laptop computer. Furthermore, Fisher’s approach was proposed for univariate samples. But this approach can also be generalized to the multivariate case. In this monograph, we present the solution to the afore-mentioned multivariate generalization of the Behrens-Fisher problem. We start out by presenting a test of multivariate normality, proceed to test(s) of equality of covariance matrices, and end with our solution to the multivariate Behrens-Fisher problem. All methods proposed in this monograph will be include both the randomly-incomplete-data case as well as the complete-data case. Moreover, all methods considered in this monograph will be tested using both simulations and examples.
Author: Bradley Efron Publisher: Cambridge University Press ISBN: 1139492136 Category : Mathematics Languages : en Pages :
Book Description
We live in a new age for statistical inference, where modern scientific technology such as microarrays and fMRI machines routinely produce thousands and sometimes millions of parallel data sets, each with its own estimation or testing problem. Doing thousands of problems at once is more than repeated application of classical methods. Taking an empirical Bayes approach, Bradley Efron, inventor of the bootstrap, shows how information accrues across problems in a way that combines Bayesian and frequentist ideas. Estimation, testing and prediction blend in this framework, producing opportunities for new methodologies of increased power. New difficulties also arise, easily leading to flawed inferences. This book takes a careful look at both the promise and pitfalls of large-scale statistical inference, with particular attention to false discovery rates, the most successful of the new statistical techniques. Emphasis is on the inferential ideas underlying technical developments, illustrated using a large number of real examples.
Author: Tony Cai Publisher: ISBN: Category : Languages : en Pages : 0
Book Description
Due to rapid technological advances, researchers are now able to collect and analyze ever larger data sets. Statistical inference for big data often requires solving thousands or even millions of parallel inference problems simultaneously. This poses significant challenges and calls for new principles, theories, and methodologies. This review provides a selective survey of some recently developed methods and results for large-scale statistical inference, including detection, estimation, and multiple testing. We begin with the global testing problem, where the goal is to detect the existence of sparse signals in a data set, and then move to the problem of estimating the proportion of nonnull effects. Finally, we focus on multiple testing with false discovery rate (FDR) control. The FDR provides a powerful and practical approach to large-scale multiple testing and has been successfully used in a wide range of applications. We discuss several effective data-driven procedures and also present efficient strategies to handle various grouping, hierarchical, and dependency structures in the data.
Author: Peter H. Westfall Publisher: John Wiley & Sons ISBN: 9780471557616 Category : Mathematics Languages : en Pages : 382
Book Description
Combines recent developments in resampling technology (including the bootstrap) with new methods for multiple testing that are easy to use, convenient to report and widely applicable. Software from SAS Institute is available to execute many of the methods and programming is straightforward for other applications. Explains how to summarize results using adjusted p-values which do not necessitate cumbersome table look-ups. Demonstrates how to incorporate logical constraints among hypotheses, further improving power.
Author: Yu Gao
Author: Yu Gao
Author: Xinping Cui
Author: Xiaoyu Dai
Author: Yihan Li
Author: Bradley Efron
Author: Tejas Desai
Author: Bradley Efron
Author: Tony Cai
Author: Peter H. Westfall
Author: Wenge Guo