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Scalable Bayesian spatial analysis with Gaussian Markov random fields

Scalable Bayesian spatial analysis with Gaussian Markov random fields PDF Author: Per Sidén
Publisher: Linköping University Electronic Press
ISBN: 9179298184
Category :
Languages : en
Pages : 53

Book Description
Accurate statistical analysis of spatial data is important in many applications. Failing to properly account for spatial autocorrelation may often lead to false conclusions. At the same time, the ever-increasing sizes of spatial datasets pose a great computational challenge, as many standard methods for spatial analysis are limited to a few thousand data points. In this thesis, we explore how Gaussian Markov random fields (GMRFs) can be used for scalable analysis of spatial data. GMRFs are closely connected to the commonly used Gaussian processes, but have sparsity properties that make them computationally cheap both in time and memory. The Bayesian framework enables a GMRF to be used as a spatial prior, comprising the assumption of smooth variation over space, and gives a principled way to estimate the parameters and propagate uncertainty. We develop new algorithms that enable applying GMRF priors in 3D to the brain activity inherent in functional magnetic resonance imaging (fMRI) data, with millions of observations. We show that our methods are both faster and more accurate than previous work. A method for approximating selected elements of the inverse precision matrix (i.e. the covariance matrix) is also proposed, which is important for evaluating the posterior uncertainty. In addition, we establish a link between GMRFs and deep convolutional neural networks, which have been successfully used in countless machine learning tasks for images, resulting in a deep GMRF model. Finally, we show how GMRFs can be used in real-time robotic search and rescue operations, for modeling the spatial distribution of injured persons. Tillförlitlig statistisk analys av spatiala data är viktigt inom många tillämpningar. Om inte korrekt hänsyn tas till spatial autokorrelation kan det ofta leda till felaktiga slutsatser. Samtidigt ökar ständigt storleken på de spatiala datamaterialen vilket utgör en stor beräkningsmässig utmaning, eftersom många standardmetoder för spatial analys är begränsade till några tusental datapunkter. I denna avhandling utforskar vi hur Gaussiska Markov-fält (eng: Gaussian Markov random fields, GMRF) kan användas för mer skalbara analyser av spatiala data. GMRF-modeller är nära besläktade med de ofta använda Gaussiska processerna, men har gleshetsegenskaper som gör dem beräkningsmässigt effektiva både vad gäller tids- och minnesåtgång. Det Bayesianska synsättet gör det möjligt att använda GMRF som en spatial prior som innefattar antagandet om långsam spatial variation och ger ett principiellt tillvägagångssätt för att skatta parametrar och propagera osäkerhet. Vi utvecklar nya algoritmer som gör det möjligt att använda GMRF-priors i 3D för den hjärnaktivitet som indirekt kan observeras i hjärnbilder framtagna med tekniken fMRI, som innehåller milliontals datapunkter. Vi visar att våra metoder är både snabbare och mer korrekta än tidigare forskning. En metod för att approximera utvalda element i den inversa precisionsmatrisen (dvs. kovariansmatrisen) framförs också, vilket är viktigt för att kunna evaluera osäkerheten i posteriorn. Vidare gör vi en koppling mellan GMRF och djupa neurala faltningsnätverk, som har använts framgångsrikt för mängder av bildrelaterade problem inom maskininlärning, vilket mynnar ut i en djup GMRF-modell. Slutligen visar vi hur GMRF kan användas i realtid av autonoma drönare för räddningsinsatser i katastrofområden för att modellera den spatiala fördelningen av skadade personer.

Scalable Bayesian spatial analysis with Gaussian Markov random fields

Scalable Bayesian spatial analysis with Gaussian Markov random fields PDF Author: Per Sidén
Publisher: Linköping University Electronic Press
ISBN: 9179298184
Category :
Languages : en
Pages : 53

Book Description
Accurate statistical analysis of spatial data is important in many applications. Failing to properly account for spatial autocorrelation may often lead to false conclusions. At the same time, the ever-increasing sizes of spatial datasets pose a great computational challenge, as many standard methods for spatial analysis are limited to a few thousand data points. In this thesis, we explore how Gaussian Markov random fields (GMRFs) can be used for scalable analysis of spatial data. GMRFs are closely connected to the commonly used Gaussian processes, but have sparsity properties that make them computationally cheap both in time and memory. The Bayesian framework enables a GMRF to be used as a spatial prior, comprising the assumption of smooth variation over space, and gives a principled way to estimate the parameters and propagate uncertainty. We develop new algorithms that enable applying GMRF priors in 3D to the brain activity inherent in functional magnetic resonance imaging (fMRI) data, with millions of observations. We show that our methods are both faster and more accurate than previous work. A method for approximating selected elements of the inverse precision matrix (i.e. the covariance matrix) is also proposed, which is important for evaluating the posterior uncertainty. In addition, we establish a link between GMRFs and deep convolutional neural networks, which have been successfully used in countless machine learning tasks for images, resulting in a deep GMRF model. Finally, we show how GMRFs can be used in real-time robotic search and rescue operations, for modeling the spatial distribution of injured persons. Tillförlitlig statistisk analys av spatiala data är viktigt inom många tillämpningar. Om inte korrekt hänsyn tas till spatial autokorrelation kan det ofta leda till felaktiga slutsatser. Samtidigt ökar ständigt storleken på de spatiala datamaterialen vilket utgör en stor beräkningsmässig utmaning, eftersom många standardmetoder för spatial analys är begränsade till några tusental datapunkter. I denna avhandling utforskar vi hur Gaussiska Markov-fält (eng: Gaussian Markov random fields, GMRF) kan användas för mer skalbara analyser av spatiala data. GMRF-modeller är nära besläktade med de ofta använda Gaussiska processerna, men har gleshetsegenskaper som gör dem beräkningsmässigt effektiva både vad gäller tids- och minnesåtgång. Det Bayesianska synsättet gör det möjligt att använda GMRF som en spatial prior som innefattar antagandet om långsam spatial variation och ger ett principiellt tillvägagångssätt för att skatta parametrar och propagera osäkerhet. Vi utvecklar nya algoritmer som gör det möjligt att använda GMRF-priors i 3D för den hjärnaktivitet som indirekt kan observeras i hjärnbilder framtagna med tekniken fMRI, som innehåller milliontals datapunkter. Vi visar att våra metoder är både snabbare och mer korrekta än tidigare forskning. En metod för att approximera utvalda element i den inversa precisionsmatrisen (dvs. kovariansmatrisen) framförs också, vilket är viktigt för att kunna evaluera osäkerheten i posteriorn. Vidare gör vi en koppling mellan GMRF och djupa neurala faltningsnätverk, som har använts framgångsrikt för mängder av bildrelaterade problem inom maskininlärning, vilket mynnar ut i en djup GMRF-modell. Slutligen visar vi hur GMRF kan användas i realtid av autonoma drönare för räddningsinsatser i katastrofområden för att modellera den spatiala fördelningen av skadade personer.

Gaussian Markov Random Fields

Gaussian Markov Random Fields PDF Author: Havard Rue
Publisher: CRC Press
ISBN: 0203492021
Category : Mathematics
Languages : en
Pages : 280

Book Description
Gaussian Markov Random Field (GMRF) models are most widely used in spatial statistics - a very active area of research in which few up-to-date reference works are available. This is the first book on the subject that provides a unified framework of GMRFs with particular emphasis on the computational aspects. This book includes extensive case-studie

Companion Robots for Older Adults

Companion Robots for Older Adults PDF Author: Sofia Thunberg
Publisher: Linköping University Electronic Press
ISBN: 9180755747
Category :
Languages : en
Pages : 175

Book Description
This thesis explores, through a mixed-methods approach, what happens when companion robots are deployed in care homes for older adults by looking at different perspectives from key stakeholders. Nine studies are presented with decision makers in municipalities, care staff and older adults, as participants, and the studies have primarily been carried out in the field in care homes and activity centres, where both qualitative (e.g., observations and workshops) and quantitative data (surveys) have been collected. The thesis shows that companion robots seem to be here to stay and that they can contribute to a higher quality of life for some older adults. It further presents some challenges with a certain discrepancy between what decision makers want and what staff might be able to facilitate. For future research and use of companion robots, it is key to evaluate each robot model and potential use case separately and develop clear routines for how they should be used, and most importantly, let all stakeholders be part of the process. The knowledge contribution is the holistic view of how different actors affect each other when emerging robot technology is introduced in a care environment. Den här avhandlingen utforskar vad som händer när sällskapsrobotar införs på omsorgsboenden för äldre genom att titta på perspektiv från olika intressenter. Nio studier presenteras med kommunala beslutsfattare, vårdpersonal och äldre som deltagare. Studierna har i huvudsak genomförts i fält på särskilda boenden och aktivitetscenter där både kvalitativa- (exempelvis observationer och workshops) och kvantitativa data (enkäter) har samlats in. Avhandlingen visar att sällskapsrobotar verkar vara här för att stanna och att de kan bidra till en högre livskvalitet för vissa äldre. Den visar även på en del utmaningar med en viss diskrepans mellan vad beslutsfattare vill införa och vad personalen har möjlighet att utföra i sitt arbete. För framtida forskning och användning av sällskapsrobotar är det viktigt att utvärdera varje robotmodell och varje användningsområde var för sig och ta fram tydliga rutiner för hur de ska användas, och viktigast av allt, låta alla intressenter vara en del av processen. Kunskapsbidraget med avhandlingen är en helhetssyn på hur olika aktörer påverkar varandra när ny robotteknik introduceras i en vårdmiljö

Beyond Recognition

Beyond Recognition PDF Author: Le Minh-Ha
Publisher: Linköping University Electronic Press
ISBN: 918075676X
Category :
Languages : en
Pages : 103

Book Description
This thesis addresses the need to balance the use of facial recognition systems with the need to protect personal privacy in machine learning and biometric identification. As advances in deep learning accelerate their evolution, facial recognition systems enhance security capabilities, but also risk invading personal privacy. Our research identifies and addresses critical vulnerabilities inherent in facial recognition systems, and proposes innovative privacy-enhancing technologies that anonymize facial data while maintaining its utility for legitimate applications. Our investigation centers on the development of methodologies and frameworks that achieve k-anonymity in facial datasets; leverage identity disentanglement to facilitate anonymization; exploit the vulnerabilities of facial recognition systems to underscore their limitations; and implement practical defenses against unauthorized recognition systems. We introduce novel contributions such as AnonFACES, StyleID, IdDecoder, StyleAdv, and DiffPrivate, each designed to protect facial privacy through advanced adversarial machine learning techniques and generative models. These solutions not only demonstrate the feasibility of protecting facial privacy in an increasingly surveilled world, but also highlight the ongoing need for robust countermeasures against the ever-evolving capabilities of facial recognition technology. Continuous innovation in privacy-enhancing technologies is required to safeguard individuals from the pervasive reach of digital surveillance and protect their fundamental right to privacy. By providing open-source, publicly available tools, and frameworks, this thesis contributes to the collective effort to ensure that advancements in facial recognition serve the public good without compromising individual rights. Our multi-disciplinary approach bridges the gap between biometric systems, adversarial machine learning, and generative modeling to pave the way for future research in the domain and support AI innovation where technological advancement and privacy are balanced.

Parameterized Verification of Synchronized Concurrent Programs

Parameterized Verification of Synchronized Concurrent Programs PDF Author: Zeinab Ganjei
Publisher: Linköping University Electronic Press
ISBN: 9179296971
Category :
Languages : en
Pages : 192

Book Description
There is currently an increasing demand for concurrent programs. Checking the correctness of concurrent programs is a complex task due to the interleavings of processes. Sometimes, violation of the correctness properties in such systems causes human or resource losses; therefore, it is crucial to check the correctness of such systems. Two main approaches to software analysis are testing and formal verification. Testing can help discover many bugs at a low cost. However, it cannot prove the correctness of a program. Formal verification, on the other hand, is the approach for proving program correctness. Model checking is a formal verification technique that is suitable for concurrent programs. It aims to automatically establish the correctness (expressed in terms of temporal properties) of a program through an exhaustive search of the behavior of the system. Model checking was initially introduced for the purpose of verifying finite‐state concurrent programs, and extending it to infinite‐state systems is an active research area. In this thesis, we focus on the formal verification of parameterized systems. That is, systems in which the number of executing processes is not bounded a priori. We provide fully-automatic and parameterized model checking techniques for establishing the correctness of safety properties for certain classes of concurrent programs. We provide an open‐source prototype for every technique and present our experimental results on several benchmarks. First, we address the problem of automatically checking safety properties for bounded as well as parameterized phaser programs. Phaser programs are concurrent programs that make use of the complex synchronization construct of Habanero Java phasers. For the bounded case, we establish the decidability of checking the violation of program assertions and the undecidability of checking deadlock‐freedom. For the parameterized case, we study different formulations of the verification problem and propose an exact procedure that is guaranteed to terminate for some reachability problems even in the presence of unbounded phases and arbitrarily many spawned processes. Second, we propose an approach for automatic verification of parameterized concurrent programs in which shared variables are manipulated by atomic transitions to count and synchronize the spawned processes. For this purpose, we introduce counting predicates that related counters that refer to the number of processes satisfying some given properties to the variables that are directly manipulated by the concurrent processes. We then combine existing works on the counter, predicate, and constrained monotonic abstraction and build a nested counterexample‐based refinement scheme to establish correctness. Third, we introduce Lazy Constrained Monotonic Abstraction for more efficient exploration of well‐structured abstractions of infinite‐state non‐monotonic systems. We propose several heuristics and assess the efficiency of the proposed technique by extensive experiments using our open‐source prototype. Lastly, we propose a sound but (in general) incomplete procedure for automatic verification of safety properties for a class of fault‐tolerant distributed protocols described in the Heard‐Of (HO for short) model. The HO model is a popular model for describing distributed protocols. We propose a verification procedure that is guaranteed to terminate even for unbounded number of the processes that execute the distributed protocol.

Markov Random Fields

Markov Random Fields PDF Author: Rama Chellappa
Publisher:
ISBN:
Category : Mathematics
Languages : en
Pages : 608

Book Description
Introduces the theory and application of Markov random fields in image processing/computer vision. Modelling images through the local interaction of Markov models produces algorithms for use in texture analysis, image synthesis, restoration, segmentation and surface reconstruction.

Random Fields for Spatial Data Modeling

Random Fields for Spatial Data Modeling PDF Author: Dionissios T. Hristopulos
Publisher: Springer Nature
ISBN: 9402419187
Category : Science
Languages : en
Pages : 884

Book Description
This book provides an inter-disciplinary introduction to the theory of random fields and its applications. Spatial models and spatial data analysis are integral parts of many scientific and engineering disciplines. Random fields provide a general theoretical framework for the development of spatial models and their applications in data analysis. The contents of the book include topics from classical statistics and random field theory (regression models, Gaussian random fields, stationarity, correlation functions) spatial statistics (variogram estimation, model inference, kriging-based prediction) and statistical physics (fractals, Ising model, simulated annealing, maximum entropy, functional integral representations, perturbation and variational methods). The book also explores links between random fields, Gaussian processes and neural networks used in machine learning. Connections with applied mathematics are highlighted by means of models based on stochastic partial differential equations. An interlude on autoregressive time series provides useful lower-dimensional analogies and a connection with the classical linear harmonic oscillator. Other chapters focus on non-Gaussian random fields and stochastic simulation methods. The book also presents results based on the author’s research on Spartan random fields that were inspired by statistical field theories originating in physics. The equivalence of the one-dimensional Spartan random field model with the classical, linear, damped harmonic oscillator driven by white noise is highlighted. Ideas with potentially significant computational gains for the processing of big spatial data are presented and discussed. The final chapter concludes with a description of the Karhunen-Loève expansion of the Spartan model. The book will appeal to engineers, physicists, and geoscientists whose research involves spatial models or spatial data analysis. Anyone with background in probability and statistics can read at least parts of the book. Some chapters will be easier to understand by readers familiar with differential equations and Fourier transforms.

Introduction to Bayesian Methods in Ecology and Natural Resources

Introduction to Bayesian Methods in Ecology and Natural Resources PDF Author: Edwin J. Green
Publisher: Springer Nature
ISBN: 303060750X
Category : Science
Languages : en
Pages : 188

Book Description
This book presents modern Bayesian analysis in a format that is accessible to researchers in the fields of ecology, wildlife biology, and natural resource management. Bayesian analysis has undergone a remarkable transformation since the early 1990s. Widespread adoption of Markov chain Monte Carlo techniques has made the Bayesian paradigm the viable alternative to classical statistical procedures for scientific inference. The Bayesian approach has a number of desirable qualities, three chief ones being: i) the mathematical procedure is always the same, allowing the analyst to concentrate on the scientific aspects of the problem; ii) historical information is readily used, when appropriate; and iii) hierarchical models are readily accommodated. This monograph contains numerous worked examples and the requisite computer programs. The latter are easily modified to meet new situations. A primer on probability distributions is also included because these form the basis of Bayesian inference. Researchers and graduate students in Ecology and Natural Resource Management will find this book a valuable reference.

Advances and Challenges in Space-time Modelling of Natural Events

Advances and Challenges in Space-time Modelling of Natural Events PDF Author: Emilio Porcu
Publisher: Springer Science & Business Media
ISBN: 3642170862
Category : Mathematics
Languages : en
Pages : 263

Book Description
This book arises as the natural continuation of the International Spring School "Advances and Challenges in Space-Time modelling of Natural Events," which took place in Toledo (Spain) in March 2010. This Spring School above all focused on young researchers (Master students, PhD students and post-doctoral researchers) in academics, extra-university research and the industry who are interested in learning about recent developments, new methods and applications in spatial statistics and related areas, and in exchanging ideas and findings with colleagues.

Hierarchical Modeling and Analysis for Spatial Data

Hierarchical Modeling and Analysis for Spatial Data PDF Author: Sudipto Banerjee
Publisher: CRC Press
ISBN: 020348780X
Category : Mathematics
Languages : en
Pages : 470

Book Description
Among the many uses of hierarchical modeling, their application to the statistical analysis of spatial and spatio-temporal data from areas such as epidemiology And environmental science has proven particularly fruitful. Yet to date, the few books that address the subject have been either too narrowly focused on specific aspects of spatial analysis,