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Robustness and Evolvability in Living Systems

Robustness and Evolvability in Living Systems PDF Author: Andreas Wagner
Publisher: Princeton University Press
ISBN: 1400849381
Category : Science
Languages : en
Pages : 384

Book Description
All living things are remarkably complex, yet their DNA is unstable, undergoing countless random mutations over generations. Despite this instability, most animals do not grow two heads or die, plants continue to thrive, and bacteria continue to divide. Robustness and Evolvability in Living Systems tackles this perplexing paradox. The book explores why genetic changes do not cause organisms to fail catastrophically and how evolution shapes organisms' robustness. Andreas Wagner looks at this problem from the ground up, starting with the alphabet of DNA, the genetic code, RNA, and protein molecules, moving on to genetic networks and embryonic development, and working his way up to whole organisms. He then develops an evolutionary explanation for robustness. Wagner shows how evolution by natural selection preferentially finds and favors robust solutions to the problems organisms face in surviving and reproducing. Such robustness, he argues, also enhances the potential for future evolutionary innovation. Wagner also argues that robustness has less to do with organisms having plenty of spare parts (the redundancy theory that has been popular) and more to do with the reality that mutations can change organisms in ways that do not substantively affect their fitness. Unparalleled in its field, this book offers the most detailed analysis available of all facets of robustness within organisms. It will appeal not only to biologists but also to engineers interested in the design of robust systems and to social scientists concerned with robustness in human communities and populations.

Robustness and Evolvability in Living Systems

Robustness and Evolvability in Living Systems PDF Author: Andreas Wagner
Publisher: Princeton University Press
ISBN: 1400849381
Category : Science
Languages : en
Pages : 384

Book Description
All living things are remarkably complex, yet their DNA is unstable, undergoing countless random mutations over generations. Despite this instability, most animals do not grow two heads or die, plants continue to thrive, and bacteria continue to divide. Robustness and Evolvability in Living Systems tackles this perplexing paradox. The book explores why genetic changes do not cause organisms to fail catastrophically and how evolution shapes organisms' robustness. Andreas Wagner looks at this problem from the ground up, starting with the alphabet of DNA, the genetic code, RNA, and protein molecules, moving on to genetic networks and embryonic development, and working his way up to whole organisms. He then develops an evolutionary explanation for robustness. Wagner shows how evolution by natural selection preferentially finds and favors robust solutions to the problems organisms face in surviving and reproducing. Such robustness, he argues, also enhances the potential for future evolutionary innovation. Wagner also argues that robustness has less to do with organisms having plenty of spare parts (the redundancy theory that has been popular) and more to do with the reality that mutations can change organisms in ways that do not substantively affect their fitness. Unparalleled in its field, this book offers the most detailed analysis available of all facets of robustness within organisms. It will appeal not only to biologists but also to engineers interested in the design of robust systems and to social scientists concerned with robustness in human communities and populations.

Robustness and Evolvability in Living Systems

Robustness and Evolvability in Living Systems PDF Author:
Publisher:
ISBN:
Category : Molecular evolution
Languages : en
Pages : 367

Book Description


Biological Robustness

Biological Robustness PDF Author: Marta Bertolaso
Publisher: Springer
ISBN: 3030011984
Category : Philosophy
Languages : en
Pages : 263

Book Description
This volume reviews examples and notions of robustness at several levels of biological organization. It tackles many philosophical and conceptual issues and casts an outlook on the future challenges of robustness studies in the context of a practice-oriented philosophy of science. The focus of discussion is on concrete case studies. These highlight the necessity of a level-dependent description of robust biological behaviors.Experts from the neurosciences, biochemistry, ecology, biology, and the history and the philosophy of life sciences provide a multiplex perspective on the topic. Contributions span from protein folding, to cell-level robustness, to organismal and developmental robustness, to sensorimotor systems, up to the robustness of ecological systems.Several chapters detail neurobiological case-studies. The brain, the poster child of plasticity in biology, offers multiple examples of robustness. Neurobiology explores the importance of temporal organization and multiscalarity in making this robustness-with-plasticity possible. The discussion also includes structures well beyond the brain, such as muscles and the complex feedback loops involved in the peculiar robustness of music perception. Overall, the volume grounds general reflections upon concrete case studies, opening to all the life sciences but also to non-biological and bio-inspired fields such as post-modern engineering. It will appeal to researchers, students, as well as non-expert readers.

Enhancing Evolution

Enhancing Evolution PDF Author: John Harris
Publisher: Princeton University Press
ISBN: 1400836387
Category : Science
Languages : en
Pages : 271

Book Description
In Enhancing Evolution, leading bioethicist John Harris dismantles objections to genetic engineering, stem-cell research, designer babies, and cloning and makes an ethical case for biotechnology that is both forthright and rigorous. Human enhancement, Harris argues, is a good thing--good morally, good for individuals, good as social policy, and good for a genetic heritage that needs serious improvement. Enhancing Evolution defends biotechnological interventions that could allow us to live longer, healthier, and even happier lives by, for example, providing us with immunity from cancer and HIV/AIDS. Further, Harris champions the possibility of influencing the very course of evolution to give us increased mental and physical powers--from reasoning, concentration, and memory to strength, stamina, and reaction speed. Indeed, he says, it's not only morally defensible to enhance ourselves; in some cases, it's morally obligatory. In a new preface, Harris offers a glimpse at the new science and technology to come, equipping readers with the knowledge to assess the ethics and policy dimensions of future forms of human enhancement.

Order in Living Organisms

Order in Living Organisms PDF Author: Rupert Riedl
Publisher: John Wiley & Sons
ISBN:
Category : Science
Languages : en
Pages : 342

Book Description


A New Biology for the 21st Century

A New Biology for the 21st Century PDF Author: National Research Council
Publisher: National Academies Press
ISBN: 0309147867
Category : Science
Languages : en
Pages : 113

Book Description
Now more than ever, biology has the potential to contribute practical solutions to many of the major challenges confronting the United States and the world. A New Biology for the 21st Century recommends that a "New Biology" approach-one that depends on greater integration within biology, and closer collaboration with physical, computational, and earth scientists, mathematicians and engineers-be used to find solutions to four key societal needs: sustainable food production, ecosystem restoration, optimized biofuel production, and improvement in human health. The approach calls for a coordinated effort to leverage resources across the federal, private, and academic sectors to help meet challenges and improve the return on life science research in general.

Evolvability

Evolvability PDF Author: Thomas F. Hansen
Publisher: MIT Press
ISBN: 0262545624
Category : Science
Languages : en
Pages : 407

Book Description
Essays on evolvability from the perspectives of quantitative and population genetics, evolutionary developmental biology, systems biology, macroevolution, and the philosophy of science. Evolvability—the capability of organisms to evolve—wasn’t recognized as a fundamental concept in evolutionary theory until 1990. Though there is still some debate as to whether it represents a truly new concept, the essays in this volume emphasize its value in enabling new research programs and facilitating communication among the major disciplines in evolutionary biology. The contributors, many of whom were instrumental in the development of the concept of evolvability, synthesize what we have learned about it over the past thirty years. They focus on the historical and philosophical contexts that influenced the emergence of the concept and suggest ways to develop a common language and theory to drive further evolvability research. The essays, drawn from a workshop on evolvability hosted in 2019–2020 by the Center of Advanced Study at the Norwegian Academy of Science and Letters, in Oslo, provide scientific and historical background on evolvability. The contributors represent different disciplines of evolutionary biology, including quantitative and population genetics, evolutionary developmental biology, systems biology and macroevolution, as well as the philosophy of science. This pl[urality of approaches allows researchers in disciplines as diverse as developmental biology, molecular biology, and systems biology to communicate with those working in mainstream evolutionary biology. The contributors also discuss key questions at the forefront of research on evolvability. Contributors: J. David Aponte, W. Scott Armbruster, Geir H. Bolstad, Salomé Bourg, Ingo Brigandt, Anne Calof, James M. Cheverud, Josselin Clo, Frietson Galis, Mark Grabowski, Rebecca Green, Benedikt Hallgrímsson, Thomas F. Hansen, Agnes Holstad, David Houle, David Jablonski, Arthur Lander, Arnaud LeRouzic, Alan C. Love, Ralph Marcucio, Michael B. Morrissey, Laura Nuño de la Rosa, Øystein H. Opedal, Mihaela Pavličev, Christophe Pélabon, Jane M. Reid, Heather Richbourg, Jacqueline L. Sztepanacz, Masahito Tsuboi, Cristina Villegas, Marta Vidal-García, Kjetil L. Voje, Andreas Wagner, Günter P. Wagner, Nathan M. Young

The Genetic Lottery

The Genetic Lottery PDF Author: Kathryn Paige Harden
Publisher: Princeton University Press
ISBN: 0691242100
Category : Science
Languages : en
Pages : 320

Book Description
A provocative and timely case for how the science of genetics can help create a more just and equal society In recent years, scientists like Kathryn Paige Harden have shown that DNA makes us different, in our personalities and in our health—and in ways that matter for educational and economic success in our current society. In The Genetic Lottery, Harden introduces readers to the latest genetic science, dismantling dangerous ideas about racial superiority and challenging us to grapple with what equality really means in a world where people are born different. Weaving together personal stories with scientific evidence, Harden shows why our refusal to recognize the power of DNA perpetuates the myth of meritocracy, and argues that we must acknowledge the role of genetic luck if we are ever to create a fair society. Reclaiming genetic science from the legacy of eugenics, this groundbreaking book offers a bold new vision of society where everyone thrives, regardless of how one fares in the genetic lottery.

Robustness and Evolvability in Systems Biology and Plectoneme Formation in DNA Supercoiling

Robustness and Evolvability in Systems Biology and Plectoneme Formation in DNA Supercoiling PDF Author: Bryan C. Daniels
Publisher:
ISBN:
Category :
Languages : en
Pages : 0

Book Description
This thesis consists of two parts: (1) an exploration of robustness and evolvability in systems biology and how they are informed by recent developments in the study of parameter sensitivity in large multiparameter models, and (2) a study of the sudden formation of plectonemes (supercoiled structures) in DNA using an elastic rod model. Robustness and evolvability are important ideas in systems biology, representing the surprising resilience and adaptability of living organisms. The study of "sloppy models" describes the degree to which changes in parameters change the behavior of complex models, and thus has implications for how robust or evolvable a model may be with regard to perturbations in parameters. We study these connections, finding that sloppiness provides a framework for understanding why multiparameter models often seem so robust. It also explains how robustness to external conditions can be more easily arranged than one might naively expect, and allows for diversity that could increase the evolvability of a population. When overtwisted, DNA wraps around itself (supercoils) much like a garden hose or rubber band. As a single molecule of DNA is twisted, discontinuities have recently been experimentally observed for the first time that correspond to the sudden formation of a single supercoiled structure called a plectoneme. We study the sizes of these discontinuities with an elastic rod model and a simplified phenomenological model. We use these models to make predictions about a torque jump and length dependence that have been experimentally verified. Experiments also observe thermal hopping at the transition between states with and without a plectoneme. We then investigate the dynamics of this plectoneme nucleation, using transition state theory and the elastic rod model to predict the rate of hopping. We obtain a rate about 1000 times faster than found in experiments, and attribute the discrepancy to a slow timescale introduced by the large bead used to manipulate the DNA. Finally, we review numerical methods used to implement the elastic rod model for DNA.

Dance to the Tune of Life

Dance to the Tune of Life PDF Author: Denis Noble
Publisher: Cambridge University Press
ISBN: 1107176247
Category : Medical
Languages : en
Pages : 315

Book Description
This book formulates a relativistic theory of biology, challenging the common gene-centred view of organisms.