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RNA Binding Proteins in Development and Disease

RNA Binding Proteins in Development and Disease PDF Author: Robert B. Denman
Publisher:
ISBN: 9788130802213
Category : Carrier proteins
Languages : en
Pages : 214

Book Description
Introduction - The circle of life is a philosophical construct, for want of a better term that posits the interconnectedness of all living things. In the movie The Lion King which brought the term to the consciousness of the Western mind, Mufasa tries to explain the concept to his heir-apparent, Simba, by saying, we eat the antelope, but when we die, we become the grass that they eat . While the circle of life has an uncanny resonance with something deep within, especially for children, being Disney marketing magic it is never spelled out what actually connects us. I would submit to you that what this book demonstrates is that RNA binding proteins (RBPs) are some of the stuff connecting the circle of life. They are ageless, they are ubiquitous, and they are diverse. Found in all kingdoms, phyla and subphyla they impinge on all aspects of cellular metabolism from the transcription and splicing of messenger RNAs, to the formation of ribosomal RNA (see Aveilla et al. Chapter 11), from the translation of messenger RNAs (see Zhong et al. Chapter 1), to the timing of their translation and their degradation (see Pelletier et al. Chapter 2 and Vessey et al. Chapter 5). They are chaperones and repressors. More broadly they are regulators, which are in turn are regulated by a host of post-translational modifications (see Gopal et al. Chapter 3 and Kobarg Chapter 4). They play important roles in the differentiation of the nervous system (see Kawahara et al. Chapter 6), in muscle development (see Denman Chapter 7) and in germ line development (see Vessey et al. Chapter 5). Correspondingly, as befits a central role in metabolism, their loss or mutation can have profound organismal affects, from outright lethality to cancer (see Noubissi et al. Chapter 8), muscular disorders (see Meola et al. Chapter 9), eye disorders (see Schreuder et al. Chapter 10), bone marrow failure (see Aveilla et al. Chapter 11) epilepsy and mental retardation (Zhong et al. Chapter 1). Quite simply, they are RNA binding proteins . I would therefore invite the interested reader on an abbreviated tour of the circle of life that is contained in this slender tome. Of course, the very enterprise of making a book places constraints on what is included and what is not. As there are currently more than 30,000 papers on PubMed dealing with RNA binding proteins it is probable that many a would-be-reader will not find his or her favorite RBP reviewed here. Nevertheless, I would commend this book as a representative sampling of those articles, and therefore a worthwhile read for several reasons. First, the modular architecture of RBPs produces diversity via the mixing of a limited set of RNA binding motifs. Doubtless, one of the motifs the would-be reader is familiar with is discussed in these pages. Therefore, this book would offer a unique view of this motif operating in a different context. Second, the most common problem attended to within the field of RNA binding proteins is, What RNAs bind to a particular RBP and how do we know they are bona fide? By reading this book you will see how others have dealt with, or are dealing with this problem providing you the reader with the insight needed to attack this problem on another front. Finally, the dynamism of RBP-RNA interactions, coupled with their propensity to form larger aggregates make it likely that the RBP most familiar to a would-be reader associates with one or more of the RBPs reviewed here. If so, I would say, in order to know thyself, know thy neighbor . It is after all the circle of life.

RNA Binding Proteins in Development and Disease

RNA Binding Proteins in Development and Disease PDF Author: Robert B. Denman
Publisher:
ISBN: 9788130802213
Category : Carrier proteins
Languages : en
Pages : 214

Book Description
Introduction - The circle of life is a philosophical construct, for want of a better term that posits the interconnectedness of all living things. In the movie The Lion King which brought the term to the consciousness of the Western mind, Mufasa tries to explain the concept to his heir-apparent, Simba, by saying, we eat the antelope, but when we die, we become the grass that they eat . While the circle of life has an uncanny resonance with something deep within, especially for children, being Disney marketing magic it is never spelled out what actually connects us. I would submit to you that what this book demonstrates is that RNA binding proteins (RBPs) are some of the stuff connecting the circle of life. They are ageless, they are ubiquitous, and they are diverse. Found in all kingdoms, phyla and subphyla they impinge on all aspects of cellular metabolism from the transcription and splicing of messenger RNAs, to the formation of ribosomal RNA (see Aveilla et al. Chapter 11), from the translation of messenger RNAs (see Zhong et al. Chapter 1), to the timing of their translation and their degradation (see Pelletier et al. Chapter 2 and Vessey et al. Chapter 5). They are chaperones and repressors. More broadly they are regulators, which are in turn are regulated by a host of post-translational modifications (see Gopal et al. Chapter 3 and Kobarg Chapter 4). They play important roles in the differentiation of the nervous system (see Kawahara et al. Chapter 6), in muscle development (see Denman Chapter 7) and in germ line development (see Vessey et al. Chapter 5). Correspondingly, as befits a central role in metabolism, their loss or mutation can have profound organismal affects, from outright lethality to cancer (see Noubissi et al. Chapter 8), muscular disorders (see Meola et al. Chapter 9), eye disorders (see Schreuder et al. Chapter 10), bone marrow failure (see Aveilla et al. Chapter 11) epilepsy and mental retardation (Zhong et al. Chapter 1). Quite simply, they are RNA binding proteins . I would therefore invite the interested reader on an abbreviated tour of the circle of life that is contained in this slender tome. Of course, the very enterprise of making a book places constraints on what is included and what is not. As there are currently more than 30,000 papers on PubMed dealing with RNA binding proteins it is probable that many a would-be-reader will not find his or her favorite RBP reviewed here. Nevertheless, I would commend this book as a representative sampling of those articles, and therefore a worthwhile read for several reasons. First, the modular architecture of RBPs produces diversity via the mixing of a limited set of RNA binding motifs. Doubtless, one of the motifs the would-be reader is familiar with is discussed in these pages. Therefore, this book would offer a unique view of this motif operating in a different context. Second, the most common problem attended to within the field of RNA binding proteins is, What RNAs bind to a particular RBP and how do we know they are bona fide? By reading this book you will see how others have dealt with, or are dealing with this problem providing you the reader with the insight needed to attack this problem on another front. Finally, the dynamism of RBP-RNA interactions, coupled with their propensity to form larger aggregates make it likely that the RBP most familiar to a would-be reader associates with one or more of the RBPs reviewed here. If so, I would say, in order to know thyself, know thy neighbor . It is after all the circle of life.

Systems Biology of RNA Binding Proteins

Systems Biology of RNA Binding Proteins PDF Author: Gene W. Yeo
Publisher: Springer
ISBN: 1493912216
Category : Science
Languages : en
Pages : 474

Book Description
After transcription in the nucleus, RNA binding proteins (RBPs) recognize cis-regulatory RNA elements within pre-mRNA sequence to form mRNA-protein (mRNP) complexes. Similarly to DNA binding proteins such as transcription factors that regulate gene expression by binding to DNA elements in the promoters of genes, RBPs regulate the fate of target RNAs by interacting with specific sequences or RNA secondary structural features within the transcribed RNA molecule. The set of functional RNA elements recognized by RBPs within target RNAs and which control the temporal, functional and spatial dynamics of the target RNA define a putative “mRNP code”. These cis-regulatory RNA elements can be found in the 5’ and 3’ untranslated regions (UTRs), introns, and exons of all protein-coding genes. RNA elements in 5’ and 3’ UTRs are frequently involved in targeting RNA to specific cellular compartments, affecting 3’ end formation, controlling RNA stability and regulating mRNA translation. RNA elements in introns and exons are known to function as splicing enhancers or silencers during the splicing process from pre-mRNA to mature mRNA. This book provides case studies of RNA binding proteins that regulate aspects of RNA processing that are important for fundamental understanding of diseases and development. Chapters include systems-level perspectives, mechanistic insights into RNA processing and RNA Binding proteins in genetic variation, development and disease. The content focuses on systems biology and genomics of RNA Binding proteins and their relation to human diseases.

RNA Processing

RNA Processing PDF Author: Gene W. Yeo
Publisher: Springer
ISBN: 9783319804842
Category : Medical
Languages : en
Pages : 326

Book Description
Ribonucleic acid (RNA) binding proteins currently number in the thousands and defects in their function are at the heart of diseases such as cancer and neurodegeneration. RNA binding proteins have become implicated in the intricate control of surprisingly diverse biological settings, such as circadian rhythm, stem cell self-renewal, oncogenesis and germ cell development. This book surveys a range of genome-wide and systems approaches to studying RNA binding proteins, the importance of RNA binding proteins in development, cancer and circadian rhythm.

RNA Binding Proteins

RNA Binding Proteins PDF Author: Kathryn Sandberg
Publisher: Springer Science & Business Media
ISBN: 1475764464
Category : Medical
Languages : en
Pages : 318

Book Description
RNA binding proteins are an exciting area of research in gene regulation. A multitude of RNA-protein interactions are used to regulate gene expression including pre-mRNA splicing, polyadenylation, editing, transport, cytoplasmic targeting, translation and mRNA turnover. In addition to these post-transcriptional processes, RNA-protein interactions play a key role in transcription as illustrated by the life cycle of retroviruses. Unlike DNA, the structure of RNA is highly variable and conformationally flexible, thus creating a number of unique binding sites and the potential for complex regulation by RNA binding proteins. Although there is a wide range of topics included in this volume, general themes have been repeated, highlighting the overall integrative nature of RNA binding proteins. The chapters have been separated into three different sections: Translational Control; mRNA Metabolism; and Hormonal and Homeostatic Regulation. The chapters of this volume were written with the seasoned investigator and student in mind. Summaries of key concepts are reviewed within each chapter as well as guiding questions that can be used to stimulate class discussions. The Editors of this volume hope that this compendium educates, enthralls, and stimulates the readers to look to the future possibilities in this rapidly evolving field.

RNA Binding Proteins

RNA Binding Proteins PDF Author: Zdravko Lorkovic
Publisher: CRC Press
ISBN: 149871336X
Category : Science
Languages : en
Pages : 174

Book Description
Gene expression in eukaryotes is regulated at different levels, which need to be coordinated to implement the information in the genome. Now it is clear that post-transcriptional regulation of gene expression such as pre-mRNA splicing, mRNA transport, editing, turnover and translation are as important as the control of transcription. In all aspects

RNA Processing

RNA Processing PDF Author: Gene W. Yeo
Publisher: Springer
ISBN: 3319290738
Category : Medical
Languages : en
Pages : 335

Book Description
Ribonucleic acid (RNA) binding proteins currently number in the thousands and defects in their function are at the heart of diseases such as cancer and neurodegeneration. RNA binding proteins have become implicated in the intricate control of surprisingly diverse biological settings, such as circadian rhythm, stem cell self-renewal, oncogenesis and germ cell development. This book surveys a range of genome-wide and systems approaches to studying RNA binding proteins, the importance of RNA binding proteins in development, cancer and circadian rhythm.

RNA-protein Interactions

RNA-protein Interactions PDF Author: Kiyoshi Nagai
Publisher: Oxford University Press, USA
ISBN:
Category : Medical
Languages : en
Pages : 302

Book Description
The study of RNA-protein interactions is crucial to understanding the mechanisms and control of gene expression and protein synthesis. The realization that RNAs are often far more biologically active than was previously appreciated has stimulated a great deal of new research in this field. Uniquely, in this book, the world's leading researchers have collaborated to produce a comprehensive and current review of RNA-protein interactions for all scientists working in this area. Timely, comprehensive, and authoritative, this new Frontiers title will be invaluable for all researchers in molecular biology, biochemistry and structural biology.

Post‐Transcriptional Regulation by STAR Proteins

Post‐Transcriptional Regulation by STAR Proteins PDF Author: Talila Volk
Publisher: Springer Science & Business Media
ISBN: 1441970053
Category : Medical
Languages : en
Pages : 176

Book Description
This book examines the available information on the structure of the RNA binding STAR domain and provides insights into how these proteins discriminate between different RNA targets. It reviews what is known about STAR proteins and human disease.

Investigating the Role of the RNA Binding Protein HuR in Skeletal Development and Disease

Investigating the Role of the RNA Binding Protein HuR in Skeletal Development and Disease PDF Author: Kirsty Anne Johnson
Publisher:
ISBN:
Category :
Languages : en
Pages :

Book Description


RNA Regulation in Development and Disease

RNA Regulation in Development and Disease PDF Author: Maritza Jaramillo
Publisher: Frontiers Media SA
ISBN: 2889637891
Category :
Languages : en
Pages : 228

Book Description