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Author: James Garrett Bonner Publisher: ISBN: 9780438897878 Category : Mass spectrometry Languages : en Pages : 107
Book Description
Specific factors scrutinized herein include a detailed understanding of participating electrostatic interactions within gas-phase peptides and proteins, as these are the most influential factors for the structures in the absence of intermolecular interactions. The exquisite precision afforded by action excitation energy transfer paired with molecular dynamics is used to probe local ion-dipole and ion-ion behavior in the absence of solvent versus partial solvation. Utilizing a newly developed technique termed photoelectron transfer dissociation, the prevalence of gaseous zwitterions are investigated. This particular coulombic interaction was chosen due to important structural implications being tied to their existence and the fact that little is currently known about their propensity to exist in the gas-phase. Efforts are also made to facilitate crosslinking analysis used for structural elucidation by incorporating 213 nm UVPD into the MS/MS workflow. Crosslink-specific fragmentation produces reporter ions able to drastically reduce search space allowing for confident identification and further insights into molecular structure. These and other experiments serve to better our understanding of protein structure and its stability outside of a native context.
Author: James Garrett Bonner Publisher: ISBN: 9780438897878 Category : Mass spectrometry Languages : en Pages : 107
Book Description
Specific factors scrutinized herein include a detailed understanding of participating electrostatic interactions within gas-phase peptides and proteins, as these are the most influential factors for the structures in the absence of intermolecular interactions. The exquisite precision afforded by action excitation energy transfer paired with molecular dynamics is used to probe local ion-dipole and ion-ion behavior in the absence of solvent versus partial solvation. Utilizing a newly developed technique termed photoelectron transfer dissociation, the prevalence of gaseous zwitterions are investigated. This particular coulombic interaction was chosen due to important structural implications being tied to their existence and the fact that little is currently known about their propensity to exist in the gas-phase. Efforts are also made to facilitate crosslinking analysis used for structural elucidation by incorporating 213 nm UVPD into the MS/MS workflow. Crosslink-specific fragmentation produces reporter ions able to drastically reduce search space allowing for confident identification and further insights into molecular structure. These and other experiments serve to better our understanding of protein structure and its stability outside of a native context.
Author: Igor A. Kaltashov Publisher: John Wiley & Sons ISBN: 0471705160 Category : Science Languages : en Pages : 320
Book Description
The first systematic summary of biophysical mass spectrometrytechniques Recent advances in mass spectrometry (MS) have pushed the frontiersof analytical chemistry into the biophysical laboratory. As aresult, the biophysical community's acceptance of MS-based methods,used to study protein higher-order structure and dynamics, hasaccelerated the expansion of biophysical MS. Despite this growing trend, until now no single text has presentedthe full array of MS-based experimental techniques and strategiesfor biophysics. Mass Spectrometry in Biophysics expertly closesthis gap in the literature. Covering the theoretical background and technical aspects of eachmethod, this much-needed reference offers an unparalleled overviewof the current state of biophysical MS. Mass Spectrometry inBiophysics begins with a helpful discussion of general biophysicalconcepts and MS-related techniques. Subsequent chaptersaddress: * Modern spectrometric hardware * High-order structure and dynamics as probed by various MS-basedmethods * Techniques used to study structure and behavior of non-nativeprotein states that become populated under denaturingconditions * Kinetic aspects of protein folding and enzyme catalysis * MS-based methods used to extract quantitative information onprotein-ligand interactions * Relation of MS-based techniques to other experimental tools * Biomolecular properties in the gas phase Fully referenced and containing a helpful appendix on the physicsof electrospray mass spectrometry, Mass Spectrometry in Biophysicsalso offers a compelling look at the current challenges facingbiomolecular MS and the potential applications that will likelyshape its future.
Author: Andreas Kukol Publisher: Humana Press ISBN: 9781493954919 Category : Science Languages : en Pages : 474
Book Description
Molecular Modeling of Proteins, Second Edition provides a theoretical background of various methods available and enables non-specialists to apply methods to their problems by including updated chapters and new material not covered in the first edition. This detailed volume opens by featuring classical and advanced simulation methods as well as methods to set-up complex systems such as lipid membranes and membrane proteins and continues with chapters devoted to the simulation and analysis of conformational changes of proteins, computational methods for protein structure prediction, usage of experimental data in combination with computational techniques, as well as protein-ligand interactions, which are relevant in the drug design process. Written for the highly successful Methods in Molecular Biology series, chapters include thorough introductions, step-by-step instructions and notes on troubleshooting and avoiding common pitfalls. Update-to-date and authoritative, Molecular Modeling of Proteins, Second Edition aims to aid researchers in the physical, chemical and biosciences interested in utilizing this powerful technology.
Author: Colin T. Mant Publisher: CRC Press ISBN: 1351440748 Category : Medical Languages : en Pages : 887
Book Description
This book consists of a series of 82 precise, easy-to-read articles by internationally renowned scientists and emphasizes the practical approach to HPLC with minimal theory, although the underlying principles for peptide and protein separations are clearly expressed. All of the major modes of microbore, ultrafast and analytical HPLC are discussed, including size-exclusion, ion-exchange, reversed-phase, hydrophobic interaction, and affinity and immunoaffinity chromatography. A section on preparative HPLC, including displacement techniques, is also presented. Problem-solving approaches to the separation of various classes of biologically active peptides and proteins are thoroughly explored, while the importance of peptide standards for monitoring column performance and for optimizing separation conditions is emphasized. Several articles focus on the choice of the correct detection method (electrochemical, UV, fluorescence), as well as the need for a proper knowledge of approaches to column and instrument maintenance and trouble-shooting. A section on predictive approaches deals with both computer simulation of peptide separations and peptide structure. The book also includes complementary techniques to HPLC, as well as other useful applications of HPLC. It enables both novice and experienced chromatographers to realize the full potential of this extremely powerful technique, in the process making an important contribution to scientific literature.
Author: M. Cristina Vega Publisher: Springer Nature ISBN: 3031521935 Category : Biochemistry Languages : en Pages : 217
Book Description
Zusammenfassung: This edited volume discusses the identification, discovery, characterization, structure determination and modeling of multicomponent macromolecular complexes, and as such, it fully complements the first volume (ISBN 978-3-319-27214-6), which targeted methods of recombinant production of protein complexes. This book is divided in 8 sections offering a selection of technologies widely used in the characterization of protein and protein-nucleic acid complexes for different purposes and at different scales. From native electrophoresis methods, that are accessible to any reasonably well-equipped laboratory, to the sophisticated setup required for structure determination by cryo-electron microscopy or X-ray crystallography, this book contains a wide variety of clearly explained analytic and preparative approaches, connected with the production techniques developed on the previous volume. The readers will find an integral connection between this book and the first volume, which ensures a comprehensive and updated discussion of the main topics of the discipline. Taken together, these volumes constitute a cohesive and authoritative source of the research on multicomponent macromolecular complexes. In here, we focus on characterization of protein complexes in the broadest sense, which is not typically covered in other sources. Moreover, all chapters are carefully written by world renowned scientists and active researchers, making this volume ideal, not only as a reference source, but also as a companion book for the daily laboratory work. This book is aimed for a wide range of scientists, from science students to experienced researchers, working on protein and protein-nucleic acid complexes, who need a thorough understanding of protein production and complex characterization.
Author: Peter B. Armentrout Publisher: Springer Science & Business Media ISBN: 3540000984 Category : Medical Languages : en Pages : 318
Book Description
I Reactivity: E. Uggerud: Physical Organic Chemistry of the Gas Phase. Reactivity Trends for Organic Cations.- S. Petrie, D.K. Bohme: Mass Spectrometric Approaches to Interstellar Chemistry.- F. Turecek: Transient Intermediates of Chemical Reactions by Neutralization-Reionization Mass Spectrometry.- II Metalorganic Chemistry: D. Schröder, H. Schwarz: Diastereoselective Effects in Gas-Phase Ion Chemistry.- D.A. Plattner: Metalorganic Chemistry in the Gas Phase: Insight into Catalysis.- III Mass Spectrometric Methodology: T. Wyttenbach, M.T. Bowers: Gas-Phase Conformations: The Ion Mobility/Ion Chromatography Method.- P.B. Armentrout: Threshold Collision-Induced Dissociations for the Determination of Accurate Gas-Phase Binding Energies and Reaction Barriers.- IV Medicinal Chemistry: S.A. Trauger, T. Junker, G. Siuzdak: Investigating Viral Proteins and Intact Viruses with Mass Spectrometry M. Brönstrup: High-Throughput Mass Spectrometry for Compound Characterization in Drug Discovery.
Author: United States. Public Health Service. Office of the Surgeon General Publisher: ISBN: Category : Government publications Languages : en Pages : 728
Book Description
This report considers the biological and behavioral mechanisms that may underlie the pathogenicity of tobacco smoke. Many Surgeon General's reports have considered research findings on mechanisms in assessing the biological plausibility of associations observed in epidemiologic studies. Mechanisms of disease are important because they may provide plausibility, which is one of the guideline criteria for assessing evidence on causation. This report specifically reviews the evidence on the potential mechanisms by which smoking causes diseases and considers whether a mechanism is likely to be operative in the production of human disease by tobacco smoke. This evidence is relevant to understanding how smoking causes disease, to identifying those who may be particularly susceptible, and to assessing the potential risks of tobacco products.
Author: James Garrett Bonner
Author: James Garrett Bonner
Author: Igor A. Kaltashov
Author: Bruce Alberts
Author: Andreas Kukol
Author: Colin T. Mant
Author: M. Cristina Vega
Author: Peter B. Armentrout
Author: United States. Public Health Service. Office of the Surgeon General
Author: National Institute of Standards and Technology (U.S.)
Author: