Author: Viswa Viswanathan
Publisher: Packt Publishing Ltd
ISBN: 178728879X
Category : Computers
Languages : en
Pages : 958
Book Description
Get savvy with R language and actualize projects aimed at analysis, visualization and machine learning About This Book Proficiently analyze data and apply machine learning techniques Generate visualizations, develop interactive visualizations and applications to understand various data exploratory functions in R Construct a predictive model by using a variety of machine learning packages Who This Book Is For This Learning Path is ideal for those who have been exposed to R, but have not used it extensively yet. It covers the basics of using R and is written for new and intermediate R users interested in learning. This Learning Path also provides in-depth insights into professional techniques for analysis, visualization, and machine learning with R – it will help you increase your R expertise, regardless of your level of experience. What You Will Learn Get data into your R environment and prepare it for analysis Perform exploratory data analyses and generate meaningful visualizations of the data Generate various plots in R using the basic R plotting techniques Create presentations and learn the basics of creating apps in R for your audience Create and inspect the transaction dataset, performing association analysis with the Apriori algorithm Visualize associations in various graph formats and find frequent itemset using the ECLAT algorithm Build, tune, and evaluate predictive models with different machine learning packages Incorporate R and Hadoop to solve machine learning problems on big data In Detail The R language is a powerful, open source, functional programming language. At its core, R is a statistical programming language that provides impressive tools to analyze data and create high-level graphics. This Learning Path is chock-full of recipes. Literally! It aims to excite you with awesome projects focused on analysis, visualization, and machine learning. We'll start off with data analysis – this will show you ways to use R to generate professional analysis reports. We'll then move on to visualizing our data – this provides you with all the guidance needed to get comfortable with data visualization with R. Finally, we'll move into the world of machine learning – this introduces you to data classification, regression, clustering, association rule mining, and dimension reduction. This Learning Path combines some of the best that Packt has to offer in one complete, curated package. It includes content from the following Packt products: R Data Analysis Cookbook by Viswa Viswanathan and Shanthi Viswanathan R Data Visualization Cookbook by Atmajitsinh Gohil Machine Learning with R Cookbook by Yu-Wei, Chiu (David Chiu) Style and approach This course creates a smooth learning path that will teach you how to analyze data and create stunning visualizations. The step-by-step instructions provided for each recipe in this comprehensive Learning Path will show you how to create machine learning projects with R.
R: Recipes for Analysis, Visualization and Machine Learning
Author: Viswa Viswanathan
Publisher: Packt Publishing Ltd
ISBN: 178728879X
Category : Computers
Languages : en
Pages : 958
Book Description
Get savvy with R language and actualize projects aimed at analysis, visualization and machine learning About This Book Proficiently analyze data and apply machine learning techniques Generate visualizations, develop interactive visualizations and applications to understand various data exploratory functions in R Construct a predictive model by using a variety of machine learning packages Who This Book Is For This Learning Path is ideal for those who have been exposed to R, but have not used it extensively yet. It covers the basics of using R and is written for new and intermediate R users interested in learning. This Learning Path also provides in-depth insights into professional techniques for analysis, visualization, and machine learning with R – it will help you increase your R expertise, regardless of your level of experience. What You Will Learn Get data into your R environment and prepare it for analysis Perform exploratory data analyses and generate meaningful visualizations of the data Generate various plots in R using the basic R plotting techniques Create presentations and learn the basics of creating apps in R for your audience Create and inspect the transaction dataset, performing association analysis with the Apriori algorithm Visualize associations in various graph formats and find frequent itemset using the ECLAT algorithm Build, tune, and evaluate predictive models with different machine learning packages Incorporate R and Hadoop to solve machine learning problems on big data In Detail The R language is a powerful, open source, functional programming language. At its core, R is a statistical programming language that provides impressive tools to analyze data and create high-level graphics. This Learning Path is chock-full of recipes. Literally! It aims to excite you with awesome projects focused on analysis, visualization, and machine learning. We'll start off with data analysis – this will show you ways to use R to generate professional analysis reports. We'll then move on to visualizing our data – this provides you with all the guidance needed to get comfortable with data visualization with R. Finally, we'll move into the world of machine learning – this introduces you to data classification, regression, clustering, association rule mining, and dimension reduction. This Learning Path combines some of the best that Packt has to offer in one complete, curated package. It includes content from the following Packt products: R Data Analysis Cookbook by Viswa Viswanathan and Shanthi Viswanathan R Data Visualization Cookbook by Atmajitsinh Gohil Machine Learning with R Cookbook by Yu-Wei, Chiu (David Chiu) Style and approach This course creates a smooth learning path that will teach you how to analyze data and create stunning visualizations. The step-by-step instructions provided for each recipe in this comprehensive Learning Path will show you how to create machine learning projects with R.
Publisher: Packt Publishing Ltd
ISBN: 178728879X
Category : Computers
Languages : en
Pages : 958
Book Description
Get savvy with R language and actualize projects aimed at analysis, visualization and machine learning About This Book Proficiently analyze data and apply machine learning techniques Generate visualizations, develop interactive visualizations and applications to understand various data exploratory functions in R Construct a predictive model by using a variety of machine learning packages Who This Book Is For This Learning Path is ideal for those who have been exposed to R, but have not used it extensively yet. It covers the basics of using R and is written for new and intermediate R users interested in learning. This Learning Path also provides in-depth insights into professional techniques for analysis, visualization, and machine learning with R – it will help you increase your R expertise, regardless of your level of experience. What You Will Learn Get data into your R environment and prepare it for analysis Perform exploratory data analyses and generate meaningful visualizations of the data Generate various plots in R using the basic R plotting techniques Create presentations and learn the basics of creating apps in R for your audience Create and inspect the transaction dataset, performing association analysis with the Apriori algorithm Visualize associations in various graph formats and find frequent itemset using the ECLAT algorithm Build, tune, and evaluate predictive models with different machine learning packages Incorporate R and Hadoop to solve machine learning problems on big data In Detail The R language is a powerful, open source, functional programming language. At its core, R is a statistical programming language that provides impressive tools to analyze data and create high-level graphics. This Learning Path is chock-full of recipes. Literally! It aims to excite you with awesome projects focused on analysis, visualization, and machine learning. We'll start off with data analysis – this will show you ways to use R to generate professional analysis reports. We'll then move on to visualizing our data – this provides you with all the guidance needed to get comfortable with data visualization with R. Finally, we'll move into the world of machine learning – this introduces you to data classification, regression, clustering, association rule mining, and dimension reduction. This Learning Path combines some of the best that Packt has to offer in one complete, curated package. It includes content from the following Packt products: R Data Analysis Cookbook by Viswa Viswanathan and Shanthi Viswanathan R Data Visualization Cookbook by Atmajitsinh Gohil Machine Learning with R Cookbook by Yu-Wei, Chiu (David Chiu) Style and approach This course creates a smooth learning path that will teach you how to analyze data and create stunning visualizations. The step-by-step instructions provided for each recipe in this comprehensive Learning Path will show you how to create machine learning projects with R.
R Data Visualization Cookbook
Author: Atmajitsinh Gohil
Publisher: Packt Publishing Ltd
ISBN: 1783989513
Category : Computers
Languages : en
Pages : 236
Book Description
If you are a data journalist, academician, student or freelance designer who wants to learn about data visualization, this book is for you. Basic knowledge of R programming is expected.
Publisher: Packt Publishing Ltd
ISBN: 1783989513
Category : Computers
Languages : en
Pages : 236
Book Description
If you are a data journalist, academician, student or freelance designer who wants to learn about data visualization, this book is for you. Basic knowledge of R programming is expected.
Handbook of HydroInformatics
Author: Saeid Eslamian
Publisher: Elsevier
ISBN: 012821970X
Category : Technology & Engineering
Languages : en
Pages : 484
Book Description
Classic Soft-Computing Techniques is the first volume of the three, in the Handbook of HydroInformatics series.? Through this comprehensive, 34-chapters work, the contributors explore the difference between traditional computing, also known as hard computing, and soft computing, which is based on the importance given to issues like precision, certainty and rigor. The chapters go on to define fundamentally classic soft-computing techniques such as Artificial Neural Network, Fuzzy Logic, Genetic Algorithm, Supporting Vector Machine, Ant-Colony Based Simulation, Bat Algorithm, Decision Tree Algorithm, Firefly Algorithm, Fish Habitat Analysis, Game Theory, Hybrid Cuckoo–Harmony Search Algorithm, Honey-Bee Mating Optimization, Imperialist Competitive Algorithm, Relevance Vector Machine, etc.?It is a fully comprehensive handbook providing all the information needed around classic soft-computing techniques. This volume is a true interdisciplinary work, and the audience includes postgraduates and early career researchers interested in Computer Science, Mathematical Science, Applied Science, Earth and Geoscience, Geography, Civil Engineering, Engineering, Water Science, Atmospheric Science, Social Science, Environment Science, Natural Resources, and Chemical Engineering. - Key insights from global contributors in the fields of data management research, climate change and resilience, insufficient data problem, etc. - Offers applied examples and case studies in each chapter, providing the reader with real world scenarios for comparison. - Introduces classic soft-computing techniques, necessary for a range of disciplines.
Publisher: Elsevier
ISBN: 012821970X
Category : Technology & Engineering
Languages : en
Pages : 484
Book Description
Classic Soft-Computing Techniques is the first volume of the three, in the Handbook of HydroInformatics series.? Through this comprehensive, 34-chapters work, the contributors explore the difference between traditional computing, also known as hard computing, and soft computing, which is based on the importance given to issues like precision, certainty and rigor. The chapters go on to define fundamentally classic soft-computing techniques such as Artificial Neural Network, Fuzzy Logic, Genetic Algorithm, Supporting Vector Machine, Ant-Colony Based Simulation, Bat Algorithm, Decision Tree Algorithm, Firefly Algorithm, Fish Habitat Analysis, Game Theory, Hybrid Cuckoo–Harmony Search Algorithm, Honey-Bee Mating Optimization, Imperialist Competitive Algorithm, Relevance Vector Machine, etc.?It is a fully comprehensive handbook providing all the information needed around classic soft-computing techniques. This volume is a true interdisciplinary work, and the audience includes postgraduates and early career researchers interested in Computer Science, Mathematical Science, Applied Science, Earth and Geoscience, Geography, Civil Engineering, Engineering, Water Science, Atmospheric Science, Social Science, Environment Science, Natural Resources, and Chemical Engineering. - Key insights from global contributors in the fields of data management research, climate change and resilience, insufficient data problem, etc. - Offers applied examples and case studies in each chapter, providing the reader with real world scenarios for comparison. - Introduces classic soft-computing techniques, necessary for a range of disciplines.
Machine Learning Using R
Author: Karthik Ramasubramanian
Publisher: Apress
ISBN: 1484223349
Category : Computers
Languages : en
Pages : 580
Book Description
Examine the latest technological advancements in building a scalable machine learning model with Big Data using R. This book shows you how to work with a machine learning algorithm and use it to build a ML model from raw data. All practical demonstrations will be explored in R, a powerful programming language and software environment for statistical computing and graphics. The various packages and methods available in R will be used to explain the topics. For every machine learning algorithm covered in this book, a 3-D approach of theory, case-study and practice will be given. And where appropriate, the mathematics will be explained through visualization in R. All the images are available in color and hi-res as part of the code download. This new paradigm of teaching machine learning will bring about a radical change in perception for many of those who think this subject is difficult to learn. Though theory sometimes looks difficult, especially when there is heavy mathematics involved, the seamless flow from the theoretical aspects to example-driven learning provided in this book makes it easy for someone to connect the dots.. What You'll Learn Use the model building process flow Apply theoretical aspects of machine learning Review industry-based cae studies Understand ML algorithms using R Build machine learning models using Apache Hadoop and Spark Who This Book is For Data scientists, data science professionals and researchers in academia who want to understand the nuances of machine learning approaches/algorithms along with ways to see them in practice using R. The book will also benefit the readers who want to understand the technology behind implementing a scalable machine learning model using Apache Hadoop, Hive, Pig and Spark.
Publisher: Apress
ISBN: 1484223349
Category : Computers
Languages : en
Pages : 580
Book Description
Examine the latest technological advancements in building a scalable machine learning model with Big Data using R. This book shows you how to work with a machine learning algorithm and use it to build a ML model from raw data. All practical demonstrations will be explored in R, a powerful programming language and software environment for statistical computing and graphics. The various packages and methods available in R will be used to explain the topics. For every machine learning algorithm covered in this book, a 3-D approach of theory, case-study and practice will be given. And where appropriate, the mathematics will be explained through visualization in R. All the images are available in color and hi-res as part of the code download. This new paradigm of teaching machine learning will bring about a radical change in perception for many of those who think this subject is difficult to learn. Though theory sometimes looks difficult, especially when there is heavy mathematics involved, the seamless flow from the theoretical aspects to example-driven learning provided in this book makes it easy for someone to connect the dots.. What You'll Learn Use the model building process flow Apply theoretical aspects of machine learning Review industry-based cae studies Understand ML algorithms using R Build machine learning models using Apache Hadoop and Spark Who This Book is For Data scientists, data science professionals and researchers in academia who want to understand the nuances of machine learning approaches/algorithms along with ways to see them in practice using R. The book will also benefit the readers who want to understand the technology behind implementing a scalable machine learning model using Apache Hadoop, Hive, Pig and Spark.
Machine Learning with R Cookbook
Author: AshishSingh Bhatia
Publisher: Packt Publishing Ltd
ISBN: 1787287807
Category : Computers
Languages : en
Pages : 564
Book Description
Explore over 110 recipes to analyze data and build predictive models with simple and easy-to-use R code About This Book Apply R to simplify predictive modeling with short and simple code Use machine learning to solve problems ranging from small to big data Build a training and testing dataset, applying different classification methods. Who This Book Is For This book is for data science professionals, data analysts, or people who have used R for data analysis and machine learning who now wish to become the go-to person for machine learning with R. Those who wish to improve the efficiency of their machine learning models and need to work with different kinds of data set will find this book very insightful. What You Will Learn Create and inspect transaction datasets and perform association analysis with the Apriori algorithm Visualize patterns and associations using a range of graphs and find frequent item-sets using the Eclat algorithm Compare differences between each regression method to discover how they solve problems Detect and impute missing values in air quality data Predict possible churn users with the classification approach Plot the autocorrelation function with time series analysis Use the Cox proportional hazards model for survival analysis Implement the clustering method to segment customer data Compress images with the dimension reduction method Incorporate R and Hadoop to solve machine learning problems on big data In Detail Big data has become a popular buzzword across many industries. An increasing number of people have been exposed to the term and are looking at how to leverage big data in their own businesses, to improve sales and profitability. However, collecting, aggregating, and visualizing data is just one part of the equation. Being able to extract useful information from data is another task, and a much more challenging one. Machine Learning with R Cookbook, Second Edition uses a practical approach to teach you how to perform machine learning with R. Each chapter is divided into several simple recipes. Through the step-by-step instructions provided in each recipe, you will be able to construct a predictive model by using a variety of machine learning packages. In this book, you will first learn to set up the R environment and use simple R commands to explore data. The next topic covers how to perform statistical analysis with machine learning analysis and assess created models, covered in detail later on in the book. You'll also learn how to integrate R and Hadoop to create a big data analysis platform. The detailed illustrations provide all the information required to start applying machine learning to individual projects. With Machine Learning with R Cookbook, machine learning has never been easier. Style and approach This is an easy-to-follow guide packed with hands-on examples of machine learning tasks. Each topic includes step-by-step instructions on tackling difficulties faced when applying R to machine learning.
Publisher: Packt Publishing Ltd
ISBN: 1787287807
Category : Computers
Languages : en
Pages : 564
Book Description
Explore over 110 recipes to analyze data and build predictive models with simple and easy-to-use R code About This Book Apply R to simplify predictive modeling with short and simple code Use machine learning to solve problems ranging from small to big data Build a training and testing dataset, applying different classification methods. Who This Book Is For This book is for data science professionals, data analysts, or people who have used R for data analysis and machine learning who now wish to become the go-to person for machine learning with R. Those who wish to improve the efficiency of their machine learning models and need to work with different kinds of data set will find this book very insightful. What You Will Learn Create and inspect transaction datasets and perform association analysis with the Apriori algorithm Visualize patterns and associations using a range of graphs and find frequent item-sets using the Eclat algorithm Compare differences between each regression method to discover how they solve problems Detect and impute missing values in air quality data Predict possible churn users with the classification approach Plot the autocorrelation function with time series analysis Use the Cox proportional hazards model for survival analysis Implement the clustering method to segment customer data Compress images with the dimension reduction method Incorporate R and Hadoop to solve machine learning problems on big data In Detail Big data has become a popular buzzword across many industries. An increasing number of people have been exposed to the term and are looking at how to leverage big data in their own businesses, to improve sales and profitability. However, collecting, aggregating, and visualizing data is just one part of the equation. Being able to extract useful information from data is another task, and a much more challenging one. Machine Learning with R Cookbook, Second Edition uses a practical approach to teach you how to perform machine learning with R. Each chapter is divided into several simple recipes. Through the step-by-step instructions provided in each recipe, you will be able to construct a predictive model by using a variety of machine learning packages. In this book, you will first learn to set up the R environment and use simple R commands to explore data. The next topic covers how to perform statistical analysis with machine learning analysis and assess created models, covered in detail later on in the book. You'll also learn how to integrate R and Hadoop to create a big data analysis platform. The detailed illustrations provide all the information required to start applying machine learning to individual projects. With Machine Learning with R Cookbook, machine learning has never been easier. Style and approach This is an easy-to-follow guide packed with hands-on examples of machine learning tasks. Each topic includes step-by-step instructions on tackling difficulties faced when applying R to machine learning.
Practical Data Science Cookbook
Author: Prabhanjan Tattar
Publisher: Packt Publishing Ltd
ISBN: 178712326X
Category : Computers
Languages : en
Pages : 428
Book Description
Over 85 recipes to help you complete real-world data science projects in R and Python About This Book Tackle every step in the data science pipeline and use it to acquire, clean, analyze, and visualize your data Get beyond the theory and implement real-world projects in data science using R and Python Easy-to-follow recipes will help you understand and implement the numerical computing concepts Who This Book Is For If you are an aspiring data scientist who wants to learn data science and numerical programming concepts through hands-on, real-world project examples, this is the book for you. Whether you are brand new to data science or you are a seasoned expert, you will benefit from learning about the structure of real-world data science projects and the programming examples in R and Python. What You Will Learn Learn and understand the installation procedure and environment required for R and Python on various platforms Prepare data for analysis by implement various data science concepts such as acquisition, cleaning and munging through R and Python Build a predictive model and an exploratory model Analyze the results of your model and create reports on the acquired data Build various tree-based methods and Build random forest In Detail As increasing amounts of data are generated each year, the need to analyze and create value out of it is more important than ever. Companies that know what to do with their data and how to do it well will have a competitive advantage over companies that don't. Because of this, there will be an increasing demand for people that possess both the analytical and technical abilities to extract valuable insights from data and create valuable solutions that put those insights to use. Starting with the basics, this book covers how to set up your numerical programming environment, introduces you to the data science pipeline, and guides you through several data projects in a step-by-step format. By sequentially working through the steps in each chapter, you will quickly familiarize yourself with the process and learn how to apply it to a variety of situations with examples using the two most popular programming languages for data analysis—R and Python. Style and approach This step-by-step guide to data science is full of hands-on examples of real-world data science tasks. Each recipe focuses on a particular task involved in the data science pipeline, ranging from readying the dataset to analytics and visualization
Publisher: Packt Publishing Ltd
ISBN: 178712326X
Category : Computers
Languages : en
Pages : 428
Book Description
Over 85 recipes to help you complete real-world data science projects in R and Python About This Book Tackle every step in the data science pipeline and use it to acquire, clean, analyze, and visualize your data Get beyond the theory and implement real-world projects in data science using R and Python Easy-to-follow recipes will help you understand and implement the numerical computing concepts Who This Book Is For If you are an aspiring data scientist who wants to learn data science and numerical programming concepts through hands-on, real-world project examples, this is the book for you. Whether you are brand new to data science or you are a seasoned expert, you will benefit from learning about the structure of real-world data science projects and the programming examples in R and Python. What You Will Learn Learn and understand the installation procedure and environment required for R and Python on various platforms Prepare data for analysis by implement various data science concepts such as acquisition, cleaning and munging through R and Python Build a predictive model and an exploratory model Analyze the results of your model and create reports on the acquired data Build various tree-based methods and Build random forest In Detail As increasing amounts of data are generated each year, the need to analyze and create value out of it is more important than ever. Companies that know what to do with their data and how to do it well will have a competitive advantage over companies that don't. Because of this, there will be an increasing demand for people that possess both the analytical and technical abilities to extract valuable insights from data and create valuable solutions that put those insights to use. Starting with the basics, this book covers how to set up your numerical programming environment, introduces you to the data science pipeline, and guides you through several data projects in a step-by-step format. By sequentially working through the steps in each chapter, you will quickly familiarize yourself with the process and learn how to apply it to a variety of situations with examples using the two most popular programming languages for data analysis—R and Python. Style and approach This step-by-step guide to data science is full of hands-on examples of real-world data science tasks. Each recipe focuses on a particular task involved in the data science pipeline, ranging from readying the dataset to analytics and visualization
R for Data Science
Author: Hadley Wickham
Publisher: "O'Reilly Media, Inc."
ISBN: 1491910364
Category : Computers
Languages : en
Pages : 521
Book Description
Learn how to use R to turn raw data into insight, knowledge, and understanding. This book introduces you to R, RStudio, and the tidyverse, a collection of R packages designed to work together to make data science fast, fluent, and fun. Suitable for readers with no previous programming experience, R for Data Science is designed to get you doing data science as quickly as possible. Authors Hadley Wickham and Garrett Grolemund guide you through the steps of importing, wrangling, exploring, and modeling your data and communicating the results. You'll get a complete, big-picture understanding of the data science cycle, along with basic tools you need to manage the details. Each section of the book is paired with exercises to help you practice what you've learned along the way. You'll learn how to: Wrangle—transform your datasets into a form convenient for analysis Program—learn powerful R tools for solving data problems with greater clarity and ease Explore—examine your data, generate hypotheses, and quickly test them Model—provide a low-dimensional summary that captures true "signals" in your dataset Communicate—learn R Markdown for integrating prose, code, and results
Publisher: "O'Reilly Media, Inc."
ISBN: 1491910364
Category : Computers
Languages : en
Pages : 521
Book Description
Learn how to use R to turn raw data into insight, knowledge, and understanding. This book introduces you to R, RStudio, and the tidyverse, a collection of R packages designed to work together to make data science fast, fluent, and fun. Suitable for readers with no previous programming experience, R for Data Science is designed to get you doing data science as quickly as possible. Authors Hadley Wickham and Garrett Grolemund guide you through the steps of importing, wrangling, exploring, and modeling your data and communicating the results. You'll get a complete, big-picture understanding of the data science cycle, along with basic tools you need to manage the details. Each section of the book is paired with exercises to help you practice what you've learned along the way. You'll learn how to: Wrangle—transform your datasets into a form convenient for analysis Program—learn powerful R tools for solving data problems with greater clarity and ease Explore—examine your data, generate hypotheses, and quickly test them Model—provide a low-dimensional summary that captures true "signals" in your dataset Communicate—learn R Markdown for integrating prose, code, and results
R Bioinformatics Cookbook
Author: Dan MacLean
Publisher: Packt Publishing Ltd
ISBN: 1789955599
Category : Science
Languages : en
Pages : 307
Book Description
Over 60 recipes to model and handle real-life biological data using modern libraries from the R ecosystem Key FeaturesApply modern R packages to handle biological data using real-world examplesRepresent biological data with advanced visualizations suitable for research and publicationsHandle real-world problems in bioinformatics such as next-generation sequencing, metagenomics, and automating analysesBook Description Handling biological data effectively requires an in-depth knowledge of machine learning techniques and computational skills, along with an understanding of how to use tools such as edgeR and DESeq. With the R Bioinformatics Cookbook, you’ll explore all this and more, tackling common and not-so-common challenges in the bioinformatics domain using real-world examples. This book will use a recipe-based approach to show you how to perform practical research and analysis in computational biology with R. You will learn how to effectively analyze your data with the latest tools in Bioconductor, ggplot, and tidyverse. The book will guide you through the essential tools in Bioconductor to help you understand and carry out protocols in RNAseq, phylogenetics, genomics, and sequence analysis. As you progress, you will get up to speed with how machine learning techniques can be used in the bioinformatics domain. You will gradually develop key computational skills such as creating reusable workflows in R Markdown and packages for code reuse. By the end of this book, you’ll have gained a solid understanding of the most important and widely used techniques in bioinformatic analysis and the tools you need to work with real biological data. What you will learnEmploy Bioconductor to determine differential expressions in RNAseq dataRun SAMtools and develop pipelines to find single nucleotide polymorphisms (SNPs) and IndelsUse ggplot to create and annotate a range of visualizationsQuery external databases with Ensembl to find functional genomics informationExecute large-scale multiple sequence alignment with DECIPHER to perform comparative genomicsUse d3.js and Plotly to create dynamic and interactive web graphicsUse k-nearest neighbors, support vector machines and random forests to find groups and classify dataWho this book is for This book is for bioinformaticians, data analysts, researchers, and R developers who want to address intermediate-to-advanced biological and bioinformatics problems by learning through a recipe-based approach. Working knowledge of R programming language and basic knowledge of bioinformatics are prerequisites.
Publisher: Packt Publishing Ltd
ISBN: 1789955599
Category : Science
Languages : en
Pages : 307
Book Description
Over 60 recipes to model and handle real-life biological data using modern libraries from the R ecosystem Key FeaturesApply modern R packages to handle biological data using real-world examplesRepresent biological data with advanced visualizations suitable for research and publicationsHandle real-world problems in bioinformatics such as next-generation sequencing, metagenomics, and automating analysesBook Description Handling biological data effectively requires an in-depth knowledge of machine learning techniques and computational skills, along with an understanding of how to use tools such as edgeR and DESeq. With the R Bioinformatics Cookbook, you’ll explore all this and more, tackling common and not-so-common challenges in the bioinformatics domain using real-world examples. This book will use a recipe-based approach to show you how to perform practical research and analysis in computational biology with R. You will learn how to effectively analyze your data with the latest tools in Bioconductor, ggplot, and tidyverse. The book will guide you through the essential tools in Bioconductor to help you understand and carry out protocols in RNAseq, phylogenetics, genomics, and sequence analysis. As you progress, you will get up to speed with how machine learning techniques can be used in the bioinformatics domain. You will gradually develop key computational skills such as creating reusable workflows in R Markdown and packages for code reuse. By the end of this book, you’ll have gained a solid understanding of the most important and widely used techniques in bioinformatic analysis and the tools you need to work with real biological data. What you will learnEmploy Bioconductor to determine differential expressions in RNAseq dataRun SAMtools and develop pipelines to find single nucleotide polymorphisms (SNPs) and IndelsUse ggplot to create and annotate a range of visualizationsQuery external databases with Ensembl to find functional genomics informationExecute large-scale multiple sequence alignment with DECIPHER to perform comparative genomicsUse d3.js and Plotly to create dynamic and interactive web graphicsUse k-nearest neighbors, support vector machines and random forests to find groups and classify dataWho this book is for This book is for bioinformaticians, data analysts, researchers, and R developers who want to address intermediate-to-advanced biological and bioinformatics problems by learning through a recipe-based approach. Working knowledge of R programming language and basic knowledge of bioinformatics are prerequisites.
Scala: Guide for Data Science Professionals
Author: Pascal Bugnion
Publisher: Packt Publishing Ltd
ISBN: 1787281035
Category : Computers
Languages : en
Pages : 1101
Book Description
Scala will be a valuable tool to have on hand during your data science journey for everything from data cleaning to cutting-edge machine learning About This Book Build data science and data engineering solutions with ease An in-depth look at each stage of the data analysis process — from reading and collecting data to distributed analytics Explore a broad variety of data processing, machine learning, and genetic algorithms through diagrams, mathematical formulations, and source code Who This Book Is For This learning path is perfect for those who are comfortable with Scala programming and now want to enter the field of data science. Some knowledge of statistics is expected. What You Will Learn Transfer and filter tabular data to extract features for machine learning Read, clean, transform, and write data to both SQL and NoSQL databases Create Scala web applications that couple with JavaScript libraries such as D3 to create compelling interactive visualizations Load data from HDFS and HIVE with ease Run streaming and graph analytics in Spark for exploratory analysis Bundle and scale up Spark jobs by deploying them into a variety of cluster managers Build dynamic workflows for scientific computing Leverage open source libraries to extract patterns from time series Master probabilistic models for sequential data In Detail Scala is especially good for analyzing large sets of data as the scale of the task doesn't have any significant impact on performance. Scala's powerful functional libraries can interact with databases and build scalable frameworks — resulting in the creation of robust data pipelines. The first module introduces you to Scala libraries to ingest, store, manipulate, process, and visualize data. Using real world examples, you will learn how to design scalable architecture to process and model data — starting from simple concurrency constructs and progressing to actor systems and Apache Spark. After this, you will also learn how to build interactive visualizations with web frameworks. Once you have become familiar with all the tasks involved in data science, you will explore data analytics with Scala in the second module. You'll see how Scala can be used to make sense of data through easy to follow recipes. You will learn about Bokeh bindings for exploratory data analysis and quintessential machine learning with algorithms with Spark ML library. You'll get a sufficient understanding of Spark streaming, machine learning for streaming data, and Spark graphX. Armed with a firm understanding of data analysis, you will be ready to explore the most cutting-edge aspect of data science — machine learning. The final module teaches you the A to Z of machine learning with Scala. You'll explore Scala for dependency injections and implicits, which are used to write machine learning algorithms. You'll also explore machine learning topics such as clustering, dimentionality reduction, Naive Bayes, Regression models, SVMs, neural networks, and more. This learning path combines some of the best that Packt has to offer into one complete, curated package. It includes content from the following Packt products: Scala for Data Science, Pascal Bugnion Scala Data Analysis Cookbook, Arun Manivannan Scala for Machine Learning, Patrick R. Nicolas Style and approach A complete package with all the information necessary to start building useful data engineering and data science solutions straight away. It contains a diverse set of recipes that cover the full spectrum of interesting data analysis tasks and will help you revolutionize your data analysis skills using Scala.
Publisher: Packt Publishing Ltd
ISBN: 1787281035
Category : Computers
Languages : en
Pages : 1101
Book Description
Scala will be a valuable tool to have on hand during your data science journey for everything from data cleaning to cutting-edge machine learning About This Book Build data science and data engineering solutions with ease An in-depth look at each stage of the data analysis process — from reading and collecting data to distributed analytics Explore a broad variety of data processing, machine learning, and genetic algorithms through diagrams, mathematical formulations, and source code Who This Book Is For This learning path is perfect for those who are comfortable with Scala programming and now want to enter the field of data science. Some knowledge of statistics is expected. What You Will Learn Transfer and filter tabular data to extract features for machine learning Read, clean, transform, and write data to both SQL and NoSQL databases Create Scala web applications that couple with JavaScript libraries such as D3 to create compelling interactive visualizations Load data from HDFS and HIVE with ease Run streaming and graph analytics in Spark for exploratory analysis Bundle and scale up Spark jobs by deploying them into a variety of cluster managers Build dynamic workflows for scientific computing Leverage open source libraries to extract patterns from time series Master probabilistic models for sequential data In Detail Scala is especially good for analyzing large sets of data as the scale of the task doesn't have any significant impact on performance. Scala's powerful functional libraries can interact with databases and build scalable frameworks — resulting in the creation of robust data pipelines. The first module introduces you to Scala libraries to ingest, store, manipulate, process, and visualize data. Using real world examples, you will learn how to design scalable architecture to process and model data — starting from simple concurrency constructs and progressing to actor systems and Apache Spark. After this, you will also learn how to build interactive visualizations with web frameworks. Once you have become familiar with all the tasks involved in data science, you will explore data analytics with Scala in the second module. You'll see how Scala can be used to make sense of data through easy to follow recipes. You will learn about Bokeh bindings for exploratory data analysis and quintessential machine learning with algorithms with Spark ML library. You'll get a sufficient understanding of Spark streaming, machine learning for streaming data, and Spark graphX. Armed with a firm understanding of data analysis, you will be ready to explore the most cutting-edge aspect of data science — machine learning. The final module teaches you the A to Z of machine learning with Scala. You'll explore Scala for dependency injections and implicits, which are used to write machine learning algorithms. You'll also explore machine learning topics such as clustering, dimentionality reduction, Naive Bayes, Regression models, SVMs, neural networks, and more. This learning path combines some of the best that Packt has to offer into one complete, curated package. It includes content from the following Packt products: Scala for Data Science, Pascal Bugnion Scala Data Analysis Cookbook, Arun Manivannan Scala for Machine Learning, Patrick R. Nicolas Style and approach A complete package with all the information necessary to start building useful data engineering and data science solutions straight away. It contains a diverse set of recipes that cover the full spectrum of interesting data analysis tasks and will help you revolutionize your data analysis skills using Scala.
Interactive and Dynamic Graphics for Data Analysis
Author: Dianne Cook
Publisher: Springer Science & Business Media
ISBN: 0387717617
Category : Computers
Languages : en
Pages : 202
Book Description
This book is about using interactive and dynamic plots on a computer screen as part of data exploration and modeling, both alone and as a partner with static graphics and non-graphical computational methods. The area of int- active and dynamic data visualization emerged within statistics as part of research on exploratory data analysis in the late 1960s, and it remains an active subject of research today, as its use in practice continues to grow. It now makes substantial contributions within computer science as well, as part of the growing ?elds of information visualization and data mining, especially visual data mining. The material in this book includes: • An introduction to data visualization, explaining how it di?ers from other types of visualization. • Adescriptionofourtoolboxofinteractiveanddynamicgraphicalmethods. • An approach for exploring missing values in data. • An explanation of the use of these tools in cluster analysis and supervised classi?cation. • An overview of additional material available on the web. • A description of the data used in the analyses and exercises. The book’s examples use the software R and GGobi. R (Ihaka & Gent- man 1996, RDevelopment CoreTeam2006) isafreesoftware environment for statistical computing and graphics; it is most often used from the command line, provides a wide variety of statistical methods, and includes high–quality staticgraphics.RaroseintheStatisticsDepartmentoftheUniversityofAu- land and is now developed and maintained by a global collaborative e?ort.
Publisher: Springer Science & Business Media
ISBN: 0387717617
Category : Computers
Languages : en
Pages : 202
Book Description
This book is about using interactive and dynamic plots on a computer screen as part of data exploration and modeling, both alone and as a partner with static graphics and non-graphical computational methods. The area of int- active and dynamic data visualization emerged within statistics as part of research on exploratory data analysis in the late 1960s, and it remains an active subject of research today, as its use in practice continues to grow. It now makes substantial contributions within computer science as well, as part of the growing ?elds of information visualization and data mining, especially visual data mining. The material in this book includes: • An introduction to data visualization, explaining how it di?ers from other types of visualization. • Adescriptionofourtoolboxofinteractiveanddynamicgraphicalmethods. • An approach for exploring missing values in data. • An explanation of the use of these tools in cluster analysis and supervised classi?cation. • An overview of additional material available on the web. • A description of the data used in the analyses and exercises. The book’s examples use the software R and GGobi. R (Ihaka & Gent- man 1996, RDevelopment CoreTeam2006) isafreesoftware environment for statistical computing and graphics; it is most often used from the command line, provides a wide variety of statistical methods, and includes high–quality staticgraphics.RaroseintheStatisticsDepartmentoftheUniversityofAu- land and is now developed and maintained by a global collaborative e?ort.