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Author: Ivan Maly Publisher: Springer Nature ISBN: 3030791467 Category : Science Languages : en Pages : 200
Book Description
This monograph sketches out a broad spectrum of problems (from evolution and metabolism to morphogenesis and biogeographical dynamics) whose solution has been impacted by mathematical models. Each of the selected examples has led to the recognition—and set direction to further study—of certain fundamental but unintuitive properties of biological systems, such as the making and breaking of specific symmetries that underlie morphogenesis. Whether they are long-established or only recently accepted, these models are selected for being thought-provoking and illuminating both the achievements and the gaps in our current understanding of the given area of biology. The selection of models is also meant to bring to the fore the existing degree of unity in the quantitative approach to diverse general-biological questions and in the systems-level properties that are discovered across the levels of biological organization. It is the thesis of this book that further cultivation of such unity is a way forward as we progress toward a general theory of living matter. This is an ideal book for students (in the broadest sense) of biology who wish to learn from this attempt to present the exemplary models, their methodological lessons, and the outline of a unified theory of living matter that is now beginning to emerge. In addition to a doctoral student preparing for quantitative biology research, this reader could also be an interdisciplinary scientist transitioning to biology. The latter—for example, a physicist or an engineer—may be comfortable with the mathematical apparatus and prepared to quickly enter the intended area of work, but desires a broader foundation in biology from the quantitative perspective.
Author: Ivan Maly Publisher: Springer Nature ISBN: 3030791467 Category : Science Languages : en Pages : 200
Book Description
This monograph sketches out a broad spectrum of problems (from evolution and metabolism to morphogenesis and biogeographical dynamics) whose solution has been impacted by mathematical models. Each of the selected examples has led to the recognition—and set direction to further study—of certain fundamental but unintuitive properties of biological systems, such as the making and breaking of specific symmetries that underlie morphogenesis. Whether they are long-established or only recently accepted, these models are selected for being thought-provoking and illuminating both the achievements and the gaps in our current understanding of the given area of biology. The selection of models is also meant to bring to the fore the existing degree of unity in the quantitative approach to diverse general-biological questions and in the systems-level properties that are discovered across the levels of biological organization. It is the thesis of this book that further cultivation of such unity is a way forward as we progress toward a general theory of living matter. This is an ideal book for students (in the broadest sense) of biology who wish to learn from this attempt to present the exemplary models, their methodological lessons, and the outline of a unified theory of living matter that is now beginning to emerge. In addition to a doctoral student preparing for quantitative biology research, this reader could also be an interdisciplinary scientist transitioning to biology. The latter—for example, a physicist or an engineer—may be comfortable with the mathematical apparatus and prepared to quickly enter the intended area of work, but desires a broader foundation in biology from the quantitative perspective.
Author: Ivan V. Maly Publisher: ISBN: 9788303079145 Category : Biomathematics Languages : en Pages : 0
Book Description
This monograph sketches out a broad spectrum of problems (from evolution and metabolism to morphogenesis and biogeographical dynamics) whose solution has been impacted by mathematical models. Each of the selected examples has led to the recognition and set direction to further study of certain fundamental but unintuitive properties of biological systems, such as the making and breaking of specific symmetries that underlie morphogenesis. Whether they are long-established or only recently accepted, these models are selected for being thought-provoking and illuminating both the achievements and the gaps in our current understanding of the given area of biology. The selection of models is also meant to bring to the fore the existing degree of unity in the quantitative approach to diverse general-biological questions and in the systems-level properties that are discovered across the levels of biological organization. It is the thesis of this book that further cultivation of such unity is a way forward as we progress toward a general theory of living matter. This is an ideal book for students (in the broadest sense) of biology who wish to learn from this attempt to present the exemplary models, their methodological lessons, and the outline of a unified theory of living matter that is now beginning to emerge. In addition to a doctoral student preparing for quantitative biology research, this reader could also be an interdisciplinary scientist transitioning to biology. The latter for example, a physicist or an engineer may be comfortable with the mathematical apparatus and prepared to quickly enter the intended area of work, but desires a broader foundation in biology from the quantitative perspective.
Author: Noriko Hiroi Publisher: Frontiers Media SA ISBN: 2889452131 Category : Languages : en Pages : 138
Book Description
With the emergence of Systems Biology, there is a greater realization that the whole behavior of a living system may not be simply described as the sum of its elements. To represent a living system using mathematical principles, practical quantities with units are required. Quantities are not only the bridge between mathematical description and biological observations; they often stand as essential elements similar to genome information in genetics. This important realization has greatly rejuvenated research in the area of Quantitative Biology. Because of the increased need for precise quantification, a new era of technological development has opened. For example, spatio-temporal high-resolution imaging enables us to track single molecule behavior in vivo. Clever artificial control of experimental conditions and molecular structures has expanded the variety of quantities that can be directly measured. In addition, improved computational power and novel algorithms for analyzing theoretical models have made it possible to investigate complex biological phenomena. This research topic is organized on two aspects of technological advances which are the backbone of Quantitative Biology: (i) visualization of biomolecules, their dynamics and function, and (ii) generic technologies of model optimization and numeric integration. We have also included articles highlighting the need for new quantitative approaches to solve some of the long-standing cell biology questions. In the first section on visualizing biomolecules, four cutting-edge techniques are presented. Ichimura et al. provide a review of quantum dots including their basic characteristics and their applications (for example, single particle tracking). Horisawa discusses a quick and stable labeling technique using click chemistry with distinct advantages compared to fluorescent protein tags. The relatively small physical size, stability of covalent bond and simple metabolic labeling procedures in living cells provides this type of technology a potential to allow long-term imaging with least interference to protein function. Obien et al. review strategies to control microelectrodes for detecting neuronal activity and discuss techniques for higher resolution and quality of recordings using monolithic integration with on-chip circuitry. Finally, the original research article by Amariei et al. describes the oscillatory behavior of metabolites in bacteria. They describe a new method to visualize the periodic dynamics of metabolites in large scale cultures populations. These four articles contribute to the development of quantitative methods visualizing diverse targets: proteins, electrical signals and metabolites. In the second section of the topic, we have included articles on the development of computational tools to fully harness the potential of quantitative measurements through either calculation based on specific model or validation of the model itself. Kimura et al. introduce optimization procedures to search for parameters in a quantitative model that can reproduce experimental data. They present four examples: transcriptional regulation, bacterial chemotaxis, morphogenesis of tissues and organs, and cell cycle regulation. The original research article by Sumiyoshi et al. presents a general methodology to accelerate stochastic simulation efforts. They introduce a method to achieve 130 times faster computation of stochastic models by applying GPGPU. The strength of such accelerated numerical calculation are sometimes underestimated in biology; faster simulation enables multiple runs and in turn improved accuracy of numerical calculation which may change the final conclusion of modeling study. This also highlights the need to carefully assess simulation results and estimations using computational tools.
Author: R.G. Davies Publisher: Elsevier ISBN: 0323147879 Category : Reference Languages : en Pages : 505
Book Description
Computer Programming in Quantitative Biology covers the general background of Fortran coding and the more sophisticated computer programs likely to be encountered in quantitative biology. It discusses the application of over 40 appropriate and easily adaptable programming techniques to problems of major biological interest. Organized into 15 chapters, the book starts by providing an introductory outline of computer structure and function needed to appreciate many basic programming procedures. A chapter discusses some general principles underlying Fortran coding and the use of digital computers, with emphasis on major features of Fortran IV. Other chapters present short introduction to the statistical or mathematical techniques in each of the main sections under which program are described. These chapters also provide some aspects of matrix algebra that are essential for serious statistical programming and offer a general guide to efficiency in programming. All complete programs are accompanied by a flowchart and a detailed discussion. This book is a valuable source of information for biologists, computational biologists, research biologists, undergraduate students, and advanced or specialized students of biology.
Author: H.O. Lancaster Publisher: Springer Science & Business Media ISBN: 1461226589 Category : Science Languages : en Pages : 310
Book Description
My original intention was to write a history of medical statistics, used in its prewar sense, expanding the writings on the subject by Major Greenwood, from which I formed many of my ideas in the early days immediately after the Second World War. In later years, I decided that the scope of his works was narrower than what I think is appropriate now, for he was writing in an era before the acceptance and use of the Fisherian methods and he was probably not aware of the mathematization of many parts of biological theory. Further, the boundary between the medical and biological sciences has largely disappeared. Many texts have now been written on branches of the theory and practice inspired by R. A. Fisher (see §4. 13). I discuss the history of the use of quantitative methods in the biological sciences, defined after the style of Peller (1967) as that branch of science that uses a quantitative approach to, or quantitative logical reasoning on, or biology. The mathematical tech any issue having to do with medicine niques are various and not classified here. Within the book I use "biological sciences" to include medicine but use the longer phrase in its title to avoid misunderstandings as to content. Moreover, most of the experimental work carried out in medical research laboratories is performed on animals other than man.
Author: William F. Morris Publisher: Sinauer Associates Incorporated ISBN: 9780878935468 Category : Science Languages : en Pages : 480
Book Description
The goal of this book is to provide practical, intelligible, and intuitive explanations of population modelling to empirical ecologists and conservation biologists. Modelling methods that do not require large amounts of data (typically unavailable for endangered species) are emphasised. As such, the book is appropriate for undergraduate and graduate students interested in quantitative conservation biology, managers charged with preserving endangered species, and, in short, for any conservation biologist or ecologist seeking to better understand the analysis and modelling of population data.
Author: Sigismund Peller Publisher: Butterworth-Heinemann ISBN: 1483281086 Category : Medical Languages : en Pages : 437
Book Description
Quantitative Research in Human Biology and Medicine reflects the author's past activities and experiences in the field of medical statistics. The book presents statistical material from a variety of medical fields. The text contains chapters that deal with different aspects of vital statistics. It provides statistical surveys of perinatal mortality rate; epidemiology of various diseases, like cancer, tuberculosis, malaria, diphtheria, and scarlatina; and discussions of various aspects of human biology such as growth and development, genetics, and nutrition. The inheritance of mental qualities; the law governing multiple births; and historical demography are covered as well. Medical statisticians and physicians will find the book interesting.
Author: Raimund J. Ober Publisher: CRC Press ISBN: 0429892136 Category : Medical Languages : en Pages : 552
Book Description
Quantitative bioimaging is a broad interdisciplinary field that exploits tools from biology, chemistry, optics, and statistical data analysis for the design and implementation of investigations of biological processes. Instead of adopting the traditional approach of focusing on just one of the component disciplines, this textbook provides a unique introduction to quantitative bioimaging that presents all of the disciplines in an integrated manner. The wide range of topics covered include basic concepts in molecular and cellular biology, relevant aspects of antibody technology, instrumentation and experimental design in fluorescence microscopy, introductory geometrical optics and diffraction theory, and parameter estimation and information theory for the analysis of stochastic data. Key Features: Comprises four parts, the first of which provides an overview of the topics that are developed from fundamental principles to more advanced levels in the other parts. Presents in the second part an in-depth introduction to the relevant background in molecular and cellular biology and in physical chemistry, which should be particularly useful for students without a formal background in these subjects. Provides in the third part a detailed treatment of microscopy techniques and optics, again starting from basic principles. Introduces in the fourth part modern statistical approaches to the determination of parameters of interest from microscopy data, in particular data generated by single molecule microscopy experiments. Uses two topics related to protein trafficking (transferrin trafficking and FcRn-mediated antibody trafficking) throughout the text to motivate and illustrate microscopy techniques. An online appendix providing the background and derivations for various mathematical results presented or used in the text is available at http://www.routledge.com/9781138598980.
Author: Julius Macleod Publisher: Forgotten Books ISBN: 9781330313770 Category : Science Languages : en Pages : 247
Book Description
Excerpt from The Quantitative Method in Biology In Physics, Chemistry and Mineralogy the properties of the objects are measured and expressed by means of figures called constants. A constant is independent of any theory: it is the exact expression of a fact. The constants are in reality the material by means of which theories are built up, the explanation of the observed facts is found and the road opened for new discoveries. In Botany and Zoology, on the contrary, the properties (characters) of the living things are usually described by means of terms. We say that a given object is long or short, broad or narrow, oblong or oval, etc. Much progress would be rendered possible if such terms as long, broad, short, etc., were replaced by figures. This would be simple enough if the properties of animals and plants were invariable. Unfortunately these properties are almost always variable, not only within the limits of one species, but also among the children of the same parents and even among the progeny of one parent. Variability has been hitherto the great obstacle which has rendered impossible the general use of quantitative data (figures) in Biological Sciences. The object of the present book is to describe a method by which biological constants may be established. In the first two chapters I have expounded certain theoretical views about the notion of species and variation. Those views afford us a guide for the discovery of the primordia (simple or elementary properties or characters) which are to be measured in order to find constants. About the Publisher Forgotten Books publishes hundreds of thousands of rare and classic books. Find more at www.forgottenbooks.com This book is a reproduction of an important historical work. Forgotten Books uses state-of-the-art technology to digitally reconstruct the work, preserving the original format whilst repairing imperfections present in the aged copy. In rare cases, an imperfection in the original, such as a blemish or missing page, may be replicated in our edition. We do, however, repair the vast majority of imperfections successfully; any imperfections that remain are intentionally left to preserve the state of such historical works.
Author: Ivan Maly
Author: Ivan Maly
Author: Ivan V. Maly
Author: Noriko Hiroi
Author: R.G. Davies
Author: H.O. Lancaster
Author: Jules MacLeod
Author: William F. Morris
Author: Sigismund Peller
Author: Raimund J. Ober
Author: Julius Macleod