Plastid Genome Rearrangement, Gene Loss, and Sequence Divergence in Geraniaceae, Passifloraceae, and Annonaceae PDF Download
Are you looking for read ebook online? Search for your book and save it on your Kindle device, PC, phones or tablets. Download Plastid Genome Rearrangement, Gene Loss, and Sequence Divergence in Geraniaceae, Passifloraceae, and Annonaceae PDF full book. Access full book title Plastid Genome Rearrangement, Gene Loss, and Sequence Divergence in Geraniaceae, Passifloraceae, and Annonaceae by John Christensen Blazier. Download full books in PDF and EPUB format.
Author: John Christensen Blazier Publisher: ISBN: Category : Languages : en Pages : 230
Book Description
Plastid genomes of flowering plants are largely identical in gene order and content, but a few lineages have been identified with many gene and intron losses, genomic rearrangements, and accelerated rates of nucleotide substitutions. These aberrant lineages present an opportunity to understand the modes of selection acting on these genomes as well as their long-term stability. My research has focused on two areas within plastid genome evolution in Geraniaceae: first, an investigation of the diversity of unusual plastid genomes in a single genus, Erodium (Geraniaceae) for chapters one and three. Chapter two focuses on the evolution of subunits of the plastid-encoded RNA polymerase (PEP). The first chapter described the loss of plastid-encoded NADPH dehydrogenase (ndh) genes from a clade of 13 Erodium species. Divergence time estimates indicate this clade is less than 5 million years old. This recent loss of ndh genes in Erodium presents an opportunity to investigate changes in photosynthetic function through comparative biochemistry between Erodium species with and without plastid-encoded ndh genes. Second, I examined the evolution of the gene encoding the alpha subunit (rpoA) of PEP in three disparate angiosperm lineages--Pelargonium (Geraniaceae), Passiflora (Passifloraceae), and Annonaceae--in which this gene has diverged so greatly that it is barely recognizable. PEP is conserved in the plastid genomes of all photosynthetic angiosperms. I found multiple lines of evidence indicating that the genes remain functional despite retaining only ~30% sequence identity with rpoA genes from outgroups. The genomes containing these divergent rpoA genes have undergone significant rearrangement due to illegitimate recombination and gene conversion, and I hypothesized that these phenomena have also driven the divergence of rpoA. Third, I conducted a survey of plastid genome evolution in Erodium with the completion of 15 additional whole genomes. Except for Erodium and some legumes, all angiosperm plastid genomes share a quadripartite structure with large and small single copy regions (LSC, SSC) and two inverted repeats (IR). I discovered a species of Erodium that has re-formed a large inverted repeat. Demonstrating a precedent for loss and regain of the IR also impacts models of evolution for other highly rearranged plastid genomes.
Author: John Christensen Blazier Publisher: ISBN: Category : Languages : en Pages : 230
Book Description
Plastid genomes of flowering plants are largely identical in gene order and content, but a few lineages have been identified with many gene and intron losses, genomic rearrangements, and accelerated rates of nucleotide substitutions. These aberrant lineages present an opportunity to understand the modes of selection acting on these genomes as well as their long-term stability. My research has focused on two areas within plastid genome evolution in Geraniaceae: first, an investigation of the diversity of unusual plastid genomes in a single genus, Erodium (Geraniaceae) for chapters one and three. Chapter two focuses on the evolution of subunits of the plastid-encoded RNA polymerase (PEP). The first chapter described the loss of plastid-encoded NADPH dehydrogenase (ndh) genes from a clade of 13 Erodium species. Divergence time estimates indicate this clade is less than 5 million years old. This recent loss of ndh genes in Erodium presents an opportunity to investigate changes in photosynthetic function through comparative biochemistry between Erodium species with and without plastid-encoded ndh genes. Second, I examined the evolution of the gene encoding the alpha subunit (rpoA) of PEP in three disparate angiosperm lineages--Pelargonium (Geraniaceae), Passiflora (Passifloraceae), and Annonaceae--in which this gene has diverged so greatly that it is barely recognizable. PEP is conserved in the plastid genomes of all photosynthetic angiosperms. I found multiple lines of evidence indicating that the genes remain functional despite retaining only ~30% sequence identity with rpoA genes from outgroups. The genomes containing these divergent rpoA genes have undergone significant rearrangement due to illegitimate recombination and gene conversion, and I hypothesized that these phenomena have also driven the divergence of rpoA. Third, I conducted a survey of plastid genome evolution in Erodium with the completion of 15 additional whole genomes. Except for Erodium and some legumes, all angiosperm plastid genomes share a quadripartite structure with large and small single copy regions (LSC, SSC) and two inverted repeats (IR). I discovered a species of Erodium that has re-formed a large inverted repeat. Demonstrating a precedent for loss and regain of the IR also impacts models of evolution for other highly rearranged plastid genomes.
Author: Publisher: Academic Press ISBN: 0128134585 Category : Science Languages : en Pages : 398
Book Description
Plastid Genome Evolution, Volume 85 provides a summary of recent research on plastid genome variation and evolution across photosynthetic organisms. It covers topics ranging from the causes and consequences of genomic changes, to the phylogenetic utility of plastomes for resolving relationships across the photosynthetic tree of life. This newly released volume presents thorough, up-to-date information on coevolution between the plastid and nuclear genomes, with chapters on plastid autonomy vs. nuclear control over plastid function, establishment and genetic integration of plastids, plastid genomes in alveolate protists, plastid genomes of glaucophytes, the evolution of the plastid genome in chlorophyte and streptophyte green algae, and more. Provides comprehensive coverage of plastid genome variation by leading researchers in the field Presents a broad range of taxonomic groups, ranging from single and multicellular algae, to the major clades of land plants Includes thorough, up-to-date information on coevolution between the plastid and nuclear genomes
Author: Andrew Groover Publisher: Springer ISBN: 3319493299 Category : Science Languages : en Pages : 379
Book Description
Marking the change in focus of tree genomics from single species to comparative approaches, this book covers biological, genomic, and evolutionary aspects of angiosperm trees that provide information and perspectives to support researchers broadening the focus of their research. The diversity of angiosperm trees in morphology, anatomy, physiology and biochemistry has been described and cataloged by various scientific disciplines, but the molecular, genetic, and evolutionary mechanisms underlying this diversity have only recently been explored. Excitingly, advances in genomic and sequencing technologies are ushering a new era of research broadly termed comparative genomics, which simultaneously exploits and describes the evolutionary origins and genetic regulation of traits of interest. Within tree genomics, this research is already underway, as the number of complete genome sequences available for angiosperm trees is increasing at an impressive pace and the number of species for which RNAseq data are available is rapidly expanding. Because they are extensively covered by other literature and are rapidly changing, technical and computational approaches—such as the latest sequencing technologies—are not a main focus of this book. Instead, this comprehensive volume provides a valuable, broader view of tree genomics whose relevance will outlive the particulars of current-day technical approaches. The first section of the book discusses background on the evolution and diversification of angiosperm trees, as well as offers description of the salient features and diversity of the unique physiology and wood anatomy of angiosperm trees. The second section explores the two most advanced model angiosperm tree species (poplars and eucalypts) as well as species that are soon to emerge as new models. The third section describes the structural features and evolutionary histories of angiosperm tree genomes, followed by a fourth section focusing on the genomics of traits of biological, ecological, and economic interest. In summary, this book is a timely and well-referenced foundational resource for the forest tree community looking to embrace comparative approaches for the study of angiosperm trees.
Author: Andres Moreira-Munoz Publisher: Springer Science & Business Media ISBN: 9048187486 Category : Science Languages : en Pages : 351
Book Description
The first and so far only Plant Geography of Chile was written about 100 years ago, since when many things have changed: plants have been renamed and reclassified; taxonomy and systematics have experienced deep changes as have biology, geography, and biogeography. The time is therefore ripe for a new look at Chile’s plants and their distribution. Focusing on three key issues – botany/systematics, geography and biogeographical analysis – this book presents a thoroughly updated synthesis both of Chilean plant geography and of the different approaches to studying it. Because of its range – from the neotropics to the temperate sub-Antarctic – Chile’s flora provides a critical insight into evolutionary patterns, particularly in relation to the distribution along the latitudinal profiles and the global geographical relationships of the country’s genera. The consequences of these relations for the evolution of the Chilean Flora are discussed. This book will provide a valuable resource for both graduate students and researchers in botany, plant taxonomy and systematics, biogeography, evolutionary biology and plant conservation.
Author: William C. Dickison Publisher: Academic Press ISBN: 0122151704 Category : Nature Languages : en Pages : 558
Book Description
Presents the basic concepts and terminology of plant anatomy with a special emphasis on its significance and applications to other disciplines. This book also highlights the important contribution made by studying anatomy to the solutions of a number of problems. It is illustrated with line drawings and photographs.
Author: William Charles Evans Publisher: Elsevier Health Sciences ISBN: 9780702041891 Category : Medical Languages : en Pages : 3322
Book Description
This encyclopedic reference work on pharmacognosy covers the study of those natural substances, principally plants, that find a use in medicine. Its popularity and longevity stem from the book's balance between classical (crude and powdered drugs' characterization and examination) and modern (phytochemistry and pharmacology) aspects of this branch of science, as well as the editor's recognition in recent years of the growing importance of complementary medicines, including herbal, homeopathic and aromatherapy. No other book provides such a wealth of detail. A reservoir of knowledge in a field where there is a resurgence of interest - plants as a source of drugs are of growing interest both in complementary medicine fields and in the pharmaceutical industry in their search for new 'lead compounds'. Dr Evans has been associated with the book for over 20 years and is a recognised authority in all parts of the world where pharmacognosy is studied, his knowledge and grasp of the subject matter is unique. Meticulously referenced and kept up to date by the editor, new contributors brought in to cover new areas. New chapter on 'Neuroceuticals'. Addition of many new compounds recently added to British Pharmacopoeia as a result of European harmonisation. Considers development in legal control and standardisation of plant materials previously regarded as 'herbal medicines'. More on the study of safety and efficacy of Chinese and Asian drugs. Quality control issues updated in line with latest guidelines (BP 2007).
Author: Gurcharan Singh Publisher: CRC Press ISBN: 1000586758 Category : Science Languages : en Pages : 940
Book Description
This fourth edition of Plant Systematics is completely revised and updated. It incorporates the updated International Code of Nomenclature for Algae, Fungi and Plants (Shenzhen Code, 2018), the new version of PhyloCode (Beta version of Phylocode 5, 2014), APweb version 14 (September, 2018), revised Angiosperm Phylogeny Group classification (APG IV, 2016), new Pteridophyte Phylogeny Group Classification (PPG I, 2016), besides the updates since the publication of third edition. The book is a blend of classical fundamental aspects and recent developments, especially in the field of molecular systematics, cladistics and computer identification. Special attention has been given to information on botanical nomenclature, identification, molecular systematics and phylogeny of angiosperms. The complicated concepts of phylogeny, taxometrics and cladistics have been explained with a view to providing a comparison between these diverse but interactive fields of study. An attempt has been made to build upon a common example when exploring different methods, especially in procedures of identification, taxometrics and cladistics. The major systems of classification are evaluated critically. Discussion on major families of Pteridophytes, Gymnosperms and Angiosperms, especially those of major phylogenetic interest, form a major portion of this edition. The ebook includes nearly 500 color photographs set out in 36 pages covering plants from different parts of the world. In addition, 305 black & white illustrations have been included to provide a better understanding of the plants covered in the book.
Author: Pal Maliga Publisher: Humana ISBN: 9781627039949 Category : Science Languages : en Pages : 0
Book Description
In Chloroplast Biotechnology: Methods and Protocols, expert researchers in the field detail many of the methods which are now commonly used in chloroplast molecular biology. Chapters focus on essential background information, applications in tobacco and protocols for plastid transformation in crops and Chlamydomonas and Bryophytes. Written in the highly successful Methods in Molecular Biology series format, chapters include introductions to their respective topics, lists of the necessary materials and reagents, step-by-step, readily reproducible laboratory protocols and key tips on troubleshooting and avoidance of known pitfalls. Authoritative and practical, Chloroplast Biotechnology: Methods and Protocols seek to aid scientists who study chloroplast molecular biology as well as those interested in applications in agriculture, industrial biotechnology and healthcare.
Author: John Christensen Blazier
Author: John Christensen Blazier
Author: Mary Margaret Guisinger
Author: 
Author: Andrew Groover
Author: Andres Moreira-Munoz
Author: William C. Dickison
Author: William Charles Evans
Author: George Bentham
Author: Gurcharan Singh
Author: Pal Maliga