Biomarker Detection Algorithms and Tools for Medical Imaging or Omic Data PDF Download

Author: Fengfeng Zhou
Publisher: Frontiers Media SA
ISBN: 2889765709
Category : Science
Languages : en
Pages : 246

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Author: Mohammad Khosravi
Publisher: Frontiers Media SA
ISBN: 2832508405
Category : Science
Languages : en
Pages : 193

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Author: Guorong Wu
Publisher: Academic Press
ISBN: 0128041145
Category : Computers
Languages : en
Pages : 514

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Book Description
Machine Learning and Medical Imaging presents state-of- the-art machine learning methods in medical image analysis. It first summarizes cutting-edge machine learning algorithms in medical imaging, including not only classical probabilistic modeling and learning methods, but also recent breakthroughs in deep learning, sparse representation/coding, and big data hashing. In the second part leading research groups around the world present a wide spectrum of machine learning methods with application to different medical imaging modalities, clinical domains, and organs. The biomedical imaging modalities include ultrasound, magnetic resonance imaging (MRI), computed tomography (CT), histology, and microscopy images. The targeted organs span the lung, liver, brain, and prostate, while there is also a treatment of examining genetic associations. Machine Learning and Medical Imaging is an ideal reference for medical imaging researchers, industry scientists and engineers, advanced undergraduate and graduate students, and clinicians. - Demonstrates the application of cutting-edge machine learning techniques to medical imaging problems - Covers an array of medical imaging applications including computer assisted diagnosis, image guided radiation therapy, landmark detection, imaging genomics, and brain connectomics - Features self-contained chapters with a thorough literature review - Assesses the development of future machine learning techniques and the further application of existing techniques

Author: Russ B Altman
Publisher: World Scientific
ISBN: 9811215642
Category : Computers
Languages : en
Pages : 764

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Book Description
The Pacific Symposium on Biocomputing (PSB) 2020 is an international, multidisciplinary conference for the presentation and discussion of current research in the theory and application of computational methods in problems of biological significance. Presentations are rigorously peer reviewed and are published in an archival proceedings volume. PSB 2020 will be held on January 3 -7, 2020 in Kohala Coast, Hawaii. Tutorials and workshops will be offered prior to the start of the conference.PSB 2020 will bring together top researchers from the US, the Asian Pacific nations, and around the world to exchange research results and address open issues in all aspects of computational biology. It is a forum for the presentation of work in databases, algorithms, interfaces, visualization, modeling, and other computational methods, as applied to biological problems, with emphasis on applications in data-rich areas of molecular biology.The PSB has been designed to be responsive to the need for critical mass in sub-disciplines within biocomputing. For that reason, it is the only meeting whose sessions are defined dynamically each year in response to specific proposals. PSB sessions are organized by leaders of research in biocomputing's 'hot topics.' In this way, the meeting provides an early forum for serious examination of emerging methods and approaches in this rapidly changing field.

Author: Zaicu Cui
Publisher: Frontiers Media SA
ISBN: 2832510213
Category : Science
Languages : en
Pages : 222

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Book Description
Neuropsychiatric disorders have a huge impact on individuals, families and societies. However, the neuropathology underlying cognitive deficits in neuropsychiatric disorders remains unclear. Resting-state functional connectivity provides a powerful way to investigate functional alterations underlying cognitive deficits in neuropsychiatric disorders. Traditional FC analysis measures the correlations of signals with an assumption that functional connectivity remains constant during the observation period. In recent years, several studies have demonstrated the feasibility of dynamic methods in characterization of functional brain changes, such as dynamic functional connectivity investigated by a sliding window method. However, selection of window size, window stepsize and window type are open areas of research and an important parameter to capture the resting-state FC dynamics.

Author: Polina Golland
Publisher: Springer
ISBN: 3319104705
Category : Computers
Languages : en
Pages : 854

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Book Description
The three-volume set LNCS 8673, 8674, and 8675 constitutes the refereed proceedings of the 17th International Conference on Medical Image Computing and Computer-Assisted Intervention, MICCAI 2014, held in Boston, MA, USA, in September 2014. Based on rigorous peer reviews, the program committee carefully selected 253 revised papers from 862 submissions for presentation in three volumes. The 100 papers included in the second volume have been organized in the following topical sections: biophysical modeling and simulation; atlas-based transfer of boundary conditions for biomechanical simulation; temporal and motion modeling; computer-aided diagnosis; pediatric imaging; endoscopy; ultrasound imaging; machine learning; cardiovascular imaging; intervention planning and guidance; and brain.

Author: Deepika Koundal
Publisher: Springer Nature
ISBN: 9819921546
Category : Medical
Languages : en
Pages : 267

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Book Description
This book explores the challenges involved in handling medical big data in the diagnosis of neurological disorders. It discusses how to optimally reduce the number of neuropsychological tests during the classification of these disorders by using feature selection methods based on the diagnostic information of enrolled subjects. The book includes key definitions/models and covers their applications in different types of signal/image processing for neurological disorder data. An extensive discussion on the possibility of enhancing the abilities of AI systems using the different data analysis is included. The book recollects several applicable basic preliminaries of the different AI networks and models, while also highlighting basic processes in image processing for various neurological disorders. It also reports on several applications to image processing and explores numerous topics concerning the role of big data analysis in addressing signal and image processing in various real-world scenarios involving neurological disorders. This cutting-edge book highlights the analysis of medical data, together with novel procedures and challenges for handling neurological signals and images. It will help engineers, researchers and software developers to understand the concepts and different models of AI and data analysis. To help readers gain a comprehensive grasp of the subject, it focuses on three key features: ● Presents outstanding concepts and models for using AI in clinical applications involving neurological disorders, with clear descriptions of image representation, feature extraction and selection. ● Highlights a range of techniques for evaluating the performance of proposed CAD systems for the diagnosis of neurological disorders. ● Examines various signal and image processing methods for efficient decision support systems. Soft computing, machine learning and optimization algorithms are also included to improve the CAD systems used.

Author: M. Jorge Cardoso
Publisher: Springer
ISBN: 331967675X
Category : Computers
Languages : en
Pages : 262

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Book Description
This book constitutes the refereed joint proceedings of the First International Workshop on Graphs in Biomedical Image Analysis, GRAIL 2017, the 6th International Workshop on Mathematical Foundations of Computational Anatomy, MFCA 2017, and the Third International Workshop on Imaging Genetics, MICGen 2017, held in conjunction with the 20th International Conference on Medical Imaging and Computer-Assisted Intervention, MICCAI 2017, in Québec City, QC, Canada, in September 2017. The 7 full papers presented at GRAIL 2017, the 10 full papers presented at MFCA 2017, and the 5 full papers presented at MICGen 2017 were carefully reviewed and selected. The GRAIL papers cover a wide range of graph based medical image analysis methods and applications, including probabilistic graphical models, neuroimaging using graph representations, machine learning for diagnosis prediction, and shape modeling. The MFCA papers deal with theoretical developments in non-linear image and surface registration in the context of computational anatomy. The MICGen papers cover topics in the field of medical genetics, computational biology and medical imaging.

Author: Min Tang
Publisher: Frontiers Media SA
ISBN: 2832506674
Category : Science
Languages : en
Pages : 224

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Book Description
As the cost of high-throughput sequencing goes down, huge volumes of biological and medical data have been produced from various sequencing platforms at multiple molecular levels including genome, transcriptome, proteome, epigenome, metabolome, and so on. For a long time, data analysis on single molecular levels has paved the way to answer many important research questions. However, many Aging-Related Neuronal Diseases (ARNDs) and Central Nervous System (CNS) aging involve interactions of molecules from multiple molecular levels, in which conclusions based on single molecular levels are usually incomplete and sometimes misleading. In these scenarios, multi-omics data analysis has unprecedentedly helped capture much more useful information for the diagnosis, treatment, prognosis, and drug discovery of ARNDs. The first step towards a multi-omics analysis is to establish reliable and robust multi-omics datasets. In the past years, a few important ARNDs-associated multi-omics databases like Allen Brain have been constructed, which raised immediate needs like data curation, normalization, interpretation, and visualization for integrative multi-omics explorations. Though there have been several well-established multi-omics databases for ARNDs like Alzheimer’s disease, similar databases for other ARNDs are still in urgent need. After the databases establish, many computational tools and experiential strategies should be developed specifically for them. First, the multi-omics data are usually extremely noisy, complex, heterogeneous and in high dimension, which presents the need for appropriate denoising and dimension reduction methods. Second, since the multi-omics and non-omics data like pathological and clinical data are usually in different data spaces, a useful algorithm to mapping them into the same data space and integrate them is nontrivial. In the multi-omics era, there are numerous data-centric tools for the integration of multi-omics datasets, which could be generally divided into three categories: unsupervised, supervised, and semi-supervised methods. Commonly used algorithms include but not limited to Bayesian-based methods, Network-based methods, multi-step analysis methods, and multiple kernel learning methods. Third, methods are needed in studying and verifying the association between two or more levels of multi-omics data and non-omics data. For example, expression quantitative trait loci (eQTL) analysis is widely used to infer the association between a single nucleotide polymorphism (SNP) and the expression of a gene. Recently, the association between omics data and more complex data like pathological and clinical imaging data has been a hot research topic. The outcomes may reveal the underlying molecular mechanism and promote de novo drug design as well as drug repurposing for ARNDs. Here, we welcome investigators to share their Original Research, Review, Mini Review, Hypothesis and Theory, Perspective, Conceptual Analysis, Data Report, Brief Research Report, Code related to multi-omics studies of ARNDs, which can be applied for better diagnosis, treatment, prognosis and drug discovery of human diseases in the future era of precision medicine. Potential contents include but are not limited to the following: ▪ Methods for integrating, interpreting, or visualizing two or more omics data. ▪ Methods for identifying interactions between different data modalities. ▪ Methods for disease subtyping, biomarker prediction. ▪ Machine learning or deep learning methods on dimensional reduction and feature selection for big noisy data. ▪ Methods for studying the association among different omics data or between omics and non-omics data like clinical, pathological, and imaging data. ▪ Review of multi-omics resource about ARNDs and/or CNS aging. ▪ Experimental validation of biomarkers identified from multi-omics data analysis. ▪ Disease diagnosis and prognosis prediction from imaging and non-imaging data analysis, or both. ▪ Clinical applications or validations of findings from multi-omics data analysis.

Author: Dinggang Shen
Publisher: Springer Nature
ISBN: 3030322459
Category : Computers
Languages : en
Pages : 908

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Book Description
The six-volume set LNCS 11764, 11765, 11766, 11767, 11768, and 11769 constitutes the refereed proceedings of the 22nd International Conference on Medical Image Computing and Computer-Assisted Intervention, MICCAI 2019, held in Shenzhen, China, in October 2019. The 539 revised full papers presented were carefully reviewed and selected from 1730 submissions in a double-blind review process. The papers are organized in the following topical sections: Part I: optical imaging; endoscopy; microscopy. Part II: image segmentation; image registration; cardiovascular imaging; growth, development, atrophy and progression. Part III: neuroimage reconstruction and synthesis; neuroimage segmentation; diffusion weighted magnetic resonance imaging; functional neuroimaging (fMRI); miscellaneous neuroimaging. Part IV: shape; prediction; detection and localization; machine learning; computer-aided diagnosis; image reconstruction and synthesis. Part V: computer assisted interventions; MIC meets CAI. Part VI: computed tomography; X-ray imaging.