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Author: Valme Jurado Publisher: Frontiers Media SA ISBN: 2832551882 Category : Science Languages : en Pages : 242
Book Description
Caves are dark, underground hollow spaces with relatively constant temperature, high humidity, and limited nutrients. Many caves are associated with karst topography, which is formed by the dissolution of soluble bedrock, such as limestone, dolomite and gypsum, in areas where groundwaters are undersaturated with respect to the minerals in the host rock. Karst landforms spread widely, accounting for approximately 20% of the earth’s dry ice-free surface (Ford and Williams, 2007). As a typical feature of subsurface landscape, karst caves develop globally, with over 50,000 distributed in the United States (Barton and Jurado, 2007). China also has a large contiguous karst terrain, and the Yunnan–Guizhou plateau in the southwest developed most karst caves, among which the longest cave exceeds 138 km (Zhang and Zhu, 2012). Many caves are relatively shallow and form near the water table in karst terranes, although some caves develop by deep-seated hypogenic process at substantial depths and by process other than dissolution such as lava flows. Caves are oligotrophic ecosystems with less than 2 mg of total organic carbon per liter, yet host flourishing microbial groups (Figure 1A), with an average number of 106 microbial cells per gram of cave rock (Barton and Jurado, 2007). The study revealed a high diversity within Bacteria domain and Proteobacteria and Actinobacteria were abundant in oligotrophic cave samples of air, rock, sediment and water. Chloroflexi, Planctomycetes, Bacteroidetes, Firmicutes, Acidobacteria, Nitrospirae, Gemmatimonadetes, and Verrucomicrobia also accounted for large proportions of the total microbial community in caves (Wu et al., 2015; Zhu et al., 2019). In some organic cave samples such as biofilms in sulfur cave, bat guanos, spiders’ webs and earthworm castings, Mycobacterium was prevalently detected (Modra et al., 2017; Sarbu et al., 2018; Hubelova et al., 2021; Pavlik et al., 2021). Over 500 genera of fungi, such as Penicillium, Aspergillus and Mortierella have been reported in caves (Vanderwolf et al., 2013), and new fungal species were identified from cave air, rock, sediment and water samples (Zhang et al., 2017, 2021). These microbial communities contain novel diversity, and promote important biogeochemical processes. With no sunlight, microorganisms in cave environment cannot perform photosynthesis, and are intensively involved in the biogeochemical cycles of carbon, nitrogen, sulfur, and metals such as Fe and Mn to offset the lack of exogenous nutrients and energy.
Author: Valme Jurado Publisher: Frontiers Media SA ISBN: 2832551882 Category : Science Languages : en Pages : 242
Book Description
Caves are dark, underground hollow spaces with relatively constant temperature, high humidity, and limited nutrients. Many caves are associated with karst topography, which is formed by the dissolution of soluble bedrock, such as limestone, dolomite and gypsum, in areas where groundwaters are undersaturated with respect to the minerals in the host rock. Karst landforms spread widely, accounting for approximately 20% of the earth’s dry ice-free surface (Ford and Williams, 2007). As a typical feature of subsurface landscape, karst caves develop globally, with over 50,000 distributed in the United States (Barton and Jurado, 2007). China also has a large contiguous karst terrain, and the Yunnan–Guizhou plateau in the southwest developed most karst caves, among which the longest cave exceeds 138 km (Zhang and Zhu, 2012). Many caves are relatively shallow and form near the water table in karst terranes, although some caves develop by deep-seated hypogenic process at substantial depths and by process other than dissolution such as lava flows. Caves are oligotrophic ecosystems with less than 2 mg of total organic carbon per liter, yet host flourishing microbial groups (Figure 1A), with an average number of 106 microbial cells per gram of cave rock (Barton and Jurado, 2007). The study revealed a high diversity within Bacteria domain and Proteobacteria and Actinobacteria were abundant in oligotrophic cave samples of air, rock, sediment and water. Chloroflexi, Planctomycetes, Bacteroidetes, Firmicutes, Acidobacteria, Nitrospirae, Gemmatimonadetes, and Verrucomicrobia also accounted for large proportions of the total microbial community in caves (Wu et al., 2015; Zhu et al., 2019). In some organic cave samples such as biofilms in sulfur cave, bat guanos, spiders’ webs and earthworm castings, Mycobacterium was prevalently detected (Modra et al., 2017; Sarbu et al., 2018; Hubelova et al., 2021; Pavlik et al., 2021). Over 500 genera of fungi, such as Penicillium, Aspergillus and Mortierella have been reported in caves (Vanderwolf et al., 2013), and new fungal species were identified from cave air, rock, sediment and water samples (Zhang et al., 2017, 2021). These microbial communities contain novel diversity, and promote important biogeochemical processes. With no sunlight, microorganisms in cave environment cannot perform photosynthesis, and are intensively involved in the biogeochemical cycles of carbon, nitrogen, sulfur, and metals such as Fe and Mn to offset the lack of exogenous nutrients and energy.
Author: Annette Summers Engel Publisher: Walter de Gruyter GmbH & Co KG ISBN: 3110339889 Category : Nature Languages : en Pages : 352
Book Description
The earth's subsurface contains abundant and active microbial biomass, living in water, occupying pore space, and colonizing mineral and rock surfaces. Caves are one type of subsurface habitat, being natural, solutionally- or collapse-enlarged openings in rock. Within the past 30 years, there has been an increase in the number of microbiology studies from cave environments to understand cave ecology, cave geology, and even the origins of life. By emphasizing the microbial life of caves, and the ecological processes and geological consequences attributed to microbes, this book provides the first authoritative and comprehensive account of the microbial life of caves for students, professionals, and general readers.
Author: Kathleen Merritt Brannen-Donnelly Publisher: ISBN: Category : Bacteria Languages : en Pages : 205
Book Description
There are approximately 48,000 known cave systems in the United States of America, with caves formed in carbonate karst terrains being the most common. Epigenic systems develop from the downward flow of meteoric water through carbonate bedrock and the solutional enlargement of interconnected subsurface conduits. Despite carbonate karst aquifers being globally extensive and important drinking water sources, microbial diversity and function are poorly understood compared to other Earth environments. After several decades of research, studies have shown that microorganisms in caves affect water quality, rates of carbonate dissolution and precipitation, and ecosystem nutrition through organic matter cycling. However, limited prior knowledge exists for the most common system, epigenic caves, regarding microbial taxonomic diversity, their metabolic capabilities, and how community function changes during and following environmental disturbances. To evaluate community development and succession, as well as potential roles in organic matter cycling, bacteria from the Cascade Cave System (CCS) in Kentucky were investigated. From geochemical and metagenomic data collected during a five-month colonization experiment, taxonomically distinct planktonic and sediment-attached bacterial communities formed along the epigenic cave stream. This represents one of the largest metagenomic studies done from any cave. Betaproteobacteria, Gammaproteobacteria, Alphaproteobacteria, and Opitutae were the most abundant groups. Planktonic bacteria pioneered sediment-attached communities, likely attributed to functional differences related to cell motility and attachment. Organic matter cycling affected exogenous heterotrophic community composition and function downstream because of diminished organic matter quality over time. This was reflected in significantly different abundances of genes encoding for carbohydrate and lignin degradation between habitats and depending on cave location. The ubiquity of environmental controls on bacteria functional diversity in karst is unknown because these environments have generally been left out of microbial biogeography research. In spatial meta-analyses of bacterial diversity data from global cave systems, the ubiquity of some bacteria in karst is evident. Despite evidence for undersampling and difficulties comparing sequencing technologies and strategies, some caves appear to have novel lineages while other caves have taxonomically similar communities despite being 1000s of kilometers apart. The implications are that microbes in karst (i.e., carbonate) caves around the world are functionally comparable.
Author: Oana Teodora Moldovan Publisher: Springer ISBN: 3319988522 Category : Science Languages : en Pages : 545
Book Description
Cave organisms are the ‘monsters’ of the underground world and studying them invariably raises interesting questions about the ways evolution has equipped them to survive in permanent darkness and low-energy environments. Undertaking ecological studies in caves and other subterranean habitats is not only challenging because they are difficult to access, but also because the domain is so different from what we know from the surface, with no plants at the base of food chains and with a nearly constant microclimate year-round. The research presented here answers key questions such as how a constant environment can produce the enormous biodiversity seen below ground, what adaptations and peculiarities allow subterranean organisms to thrive, and how they are affected by the constraints of their environment. This book is divided into six main parts, which address: the habitats of cave animals; their complex diversity; the environmental factors that support that diversity; individual case studies of cave ecosystems; and of the conservation challenges they face; all of which culminate in proposals for future research directions. Given its breadth of coverage, it offers an essential reference guide for graduate students and established researchers alike.
Author: Naowarat Cheeptham Publisher: Springer Science & Business Media ISBN: 1461452066 Category : Medical Languages : en Pages : 143
Book Description
This book details recent findings in the field of cave microbiology and builds on fast-paced efforts to exploit an unconventional and underexplored environment for new microorganisms which may provide an untapped source of drugs: microorganisms from caves.
Author: Koki Horikoshi Publisher: Wiley-Liss ISBN: Category : Medical Languages : en Pages : 344
Book Description
This text is devoted to a particular class of microbe & focuses on its ecology, systematics, physiological & molecular biology. Also included is a discussion of potentially exploitable biotechnological & industrial uses for extremophiles.
Author: Alexander Loy Publisher: Springer Science & Business Media ISBN: 9048192048 Category : Science Languages : fr Pages : 445
Book Description
The interaction of microorganisms with geological activities results in processes influencing development of the Earth’s geo- and biospheres. In assessing these microbial functions, scientists have explored short- and longterm geological changes attributed to microorganisms and developed new approaches to evaluate the physiology of microbes including microbial interaction with the geological environment. As the field of geomicrobiology developed, it has become highly interdisciplinary and this book provides a review of the recent developments in a cross section of topics including origin of life, microbial-mineral interactions and microbial processes functioning in marine as well as terrestrial environments. A major component of this book addresses molecular techniques to evaluate microbial evolution and assess relationships of microbes in complex, natural c- munities. Recent developments in so-called ‘omics’ technologies, including (meta) genomics and (meta)proteomics, and isotope labeling methods allow new insights into the function of microbial community members and their possible geological impact. While this book summarizes current knowledge in various areas, it also reveals unresolved questions that require future investigations. Information in these chapters enhances our fundamental knowledge of geomicrobiology that contributes to the exploitation of microbial functions in mineral and environmental biotechn- ogy applications. It is our hope that this book will stimulate interest in the general field of geomicrobiology and encourage others to explore microbial processes as applied to the Earth.
Author: Surajit de Mandal Publisher: Academic Press ISBN: 0128212667 Category : Science Languages : en Pages : 624
Book Description
Microorganisms are a major part of the Earth’s biological diversity. Although a lot of research has been done on microbial diversity, most of it is fragmented. This book creates the need for a unified text to be published, full of information about microbial diversity from highly reputed and impactful sources. Recent Advancements in Microbial Diversity brings a comprehensive understanding of the recent advances in microbial diversity research focused on different bodily systems, such as the gut. Recent Advancements in Microbial Diversity also discusses how the application of advanced sequencing technologies is used to reveal previously unseen microbial diversity and show off its function. Gives insight into microbial diversity in different bodily systems Explains novel approaches to studying microbial diversity Highlights the use of omics to analyze the microbial community and its functional attributes Discusses the techniques used to examine microbial diversity, including their applications and respective strengths and weaknesses
Author: David C. Culver Publisher: Oxford University Press ISBN: 0192552767 Category : Science Languages : en Pages : 336
Book Description
The second edition of this widely cited textbook continues to provide a concise but comprehensive introduction to cave and subterranean biology, describing this fascinating habitat and its biodiversity. It covers a range of biological processes including ecosystem function, evolution and adaptation, community ecology, biogeography, and conservation. The authors draw on a global range of examples and case studies from both caves and non-cave subterranean habitats. One of the barriers to the study of subterranean biology has been the extraordinarily large number of specialized terms used by researchers; the authors explain these terms clearly and minimize the number that they use. This new edition retains the same 10 chapter structure of the original, but the content has been thoroughly revised and updated throughout to reflect the huge increase in publications concerning subterranean biology over the last decade.
Author: Shavonne Morin Publisher: ISBN: Category : Languages : en Pages : 0
Book Description
Vermiculations are microbe-packed organic-rich sediment deposits that form in striking "worm-like" anastomosing patterns on cave walls. Vermiculations occur in a wide variety of morphologies and colors and share some characteristics with soil since they are made up of clay-sized mineral particles associated with both humified and labile organic matter. They are a common feature across caves of many different environments but are particularly extensive in the Frasassi cave system where they were first described (Bini et al., 1978). This study investigated the mineral composition of 30 unvermiculated and 5 unvermiculated samples from the Frassasi cave walls. The color of vermiculations was investigated with the Munsell color system. Fifteen samples were then analyzed for their bacterial, archaeal, and fungal community compositions. Lastly, multivariate analysis was conducted on each of the datasets to evaluate any trends. The 30 vermiculated and 5 unvermiculated samples had mineralogy dominated by the presence of quartz, calcite, gypsum, and muscovite. Two additional minerals, baryte and microcline, were identified in minor amounts. Principal components analysis (PCA) revealed that higher elevation samples have a tendency to contain more calcite. Munsell color analysis revealed that vermiculations are most commonly a light grayish brown color (10YR 6/4). PCA ordination showed that increasing gypsum content is correlated with an increasing Munsell color value, associated with lighter colors. Gypsum was only found in samples less than five meters above the water table, as gypsum occurring at higher elevations is likely to have been redissolved by dripping water. Prokaryotic microbial communities were dominated by putative lithoautotrophs. Sequences affiliated with six genera, all bacterial, were particularly dominant among the samples: Thioprofundum, Acidiferrobacter, Nitrospira, Thiobacillus, Gaiella, and Gemmata. Close relatives of known sulfur-oxidizing species dominated the communities, and close relatives of known ammonia-oxidizing, nitrite-oxidizing, nitrate-reducing, and methanotrophic bacteria and archaea were also present. Samples at increasing heights above the water table contain higher amounts of Thioprofundum. Bacterial and archaeal communities show that vermiculations may play an important role in the cave sulfur and nitrogen cycles. The fungal community of vermiculations was dominated by the genus Mortierella, a common soil saprotroph. Fungal community composition is highly variable across samples. Notable abundant genera include Cladosporium, Mrakia, Tarzetta, and Penicilium as they are known to prefer the moderate to cool climates of the Frasassi cave system (Thomas-Hall et al., 2010; Kirk et al., 2008; Samson et al., 2004). Fungal communities contain relatives of common soil fungi, suggesting either that the communities are influenced by the fungal community in the soil above, or that related fungi are adapted to the soil-like habitat in vermiculations. Understanding vermiculation mineralogy allows for a greater understanding of how microorganisms create macrostructures via the incorporation of local sediments. Vermiculations have the potential to be a visual biosignature for subsurface life on off-planet caves.
Author: Valme Jurado
Author: Valme Jurado
Author: Annette Summers Engel
Author: Kathleen Merritt Brannen-Donnelly
Author: Oana Teodora Moldovan
Author: Naowarat Cheeptham
Author: Koki Horikoshi
Author: Alexander Loy
Author: Surajit de Mandal
Author: David C. Culver
Author: Shavonne Morin