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Mass-selected Infrared Multiple-photon Dissociation as a Structural Probe of Gaseous Ion-molecule Complexes

Mass-selected Infrared Multiple-photon Dissociation as a Structural Probe of Gaseous Ion-molecule Complexes PDF Author: Richard Alexander Marta
Publisher:
ISBN:
Category :
Languages : en
Pages : 290

Book Description
Mass-selected infrared multiple photon spectroscopy (IRMPD), Fourier transform ion cyclotron resonance (FT-ICR) kinetic experiments, RRKM and electronic structure calculations have been performed in order to propose a complex mechanism involving the formation of the proton-bound dimer of water (H5O2) from 1,1,3,3-tetrafluorodimethyl ether. It has been found that the reaction is facilitated by a series of sequential exothermic bimolecular ion-molecule reactions. Evidence for the dominant mechanistic pathway involving the reaction of CF2H-O=CHF2, an ion of m/z 99, with water is presented. The primary channel occurs via nucleophilic attack of water on the ion of m/z 99 (CF2H-O=CHF), to lose formyl fluoride and yield protonated difluoromethanol (m/z 69). Association of a second water molecule with protonated difluoromethanol generates a reactive intermediate which decomposes via a 1,4-elimination to release hydrogen fluoride and yield the proton-bound dimer of water and formyl fluoride (m/z 67). The 1,4-elimination of hydrogen fluoride is found to be strongly supported by the results of both RRKM theory and electronic structure calculations. Lastly, the elimination of formyl fluoride occurs by the association of a third water molecule to produce H5O2 (m/z 37). The most probable isomeric forms of the ions with m/z 99 and 69 were found using IRMPD spectroscopy and electronic structure theory calculations. Thermochemical information for reactant, transition and product species was obtained using MP2/aug-cc-pVQZ//MP2(full)/6-31G(d) level of theory.

Mass-selected Infrared Multiple-photon Dissociation as a Structural Probe of Gaseous Ion-molecule Complexes

Mass-selected Infrared Multiple-photon Dissociation as a Structural Probe of Gaseous Ion-molecule Complexes PDF Author: Richard Alexander Marta
Publisher:
ISBN:
Category :
Languages : en
Pages : 290

Book Description
Mass-selected infrared multiple photon spectroscopy (IRMPD), Fourier transform ion cyclotron resonance (FT-ICR) kinetic experiments, RRKM and electronic structure calculations have been performed in order to propose a complex mechanism involving the formation of the proton-bound dimer of water (H5O2) from 1,1,3,3-tetrafluorodimethyl ether. It has been found that the reaction is facilitated by a series of sequential exothermic bimolecular ion-molecule reactions. Evidence for the dominant mechanistic pathway involving the reaction of CF2H-O=CHF2, an ion of m/z 99, with water is presented. The primary channel occurs via nucleophilic attack of water on the ion of m/z 99 (CF2H-O=CHF), to lose formyl fluoride and yield protonated difluoromethanol (m/z 69). Association of a second water molecule with protonated difluoromethanol generates a reactive intermediate which decomposes via a 1,4-elimination to release hydrogen fluoride and yield the proton-bound dimer of water and formyl fluoride (m/z 67). The 1,4-elimination of hydrogen fluoride is found to be strongly supported by the results of both RRKM theory and electronic structure calculations. Lastly, the elimination of formyl fluoride occurs by the association of a third water molecule to produce H5O2 (m/z 37). The most probable isomeric forms of the ions with m/z 99 and 69 were found using IRMPD spectroscopy and electronic structure theory calculations. Thermochemical information for reactant, transition and product species was obtained using MP2/aug-cc-pVQZ//MP2(full)/6-31G(d) level of theory.

Resonance Enhanced Two-Laser Infrared Multiple Photon Dissociation of Gaseous Ions

Resonance Enhanced Two-Laser Infrared Multiple Photon Dissociation of Gaseous Ions PDF Author: Clifford H. Watson
Publisher:
ISBN:
Category :
Languages : en
Pages : 27

Book Description
Ions trapped in a Fourier Transform Ion Cyclotron Resonance (FTICR) mass spectrometer exhibited enhanced Infrared Multiple Photon Dissociation (IRMPD) when irradiated sequentially by two carbon dioxide lasers using a novel IRMPD probe/pump photodissociation scheme. A low power pulsed (probe) laser tuned to a resonant infrared absorption band promoted trapped ions to vibrationally excited states, but had insufficient energy to cause photodissociation. Subsequent irradiation of the excited ions with a fixed-frequency, nonresonant, continuous wave (pump) laser induced photofragmentation. Photodissociation spectra were obtained by varying the wavelength of the probe laser. A novel White-type cell which dramatically enhances the effect of the probe laser has been designed and constructed for use with these experiments. Infrared multiple photo dissociation, Infrared spectra of ions, Fourier transform ion cyclotron resonance mass spectrometry, Lasers, Ions, Kinetics, Gas analysis, Collisions, Molecular structure, Energy levels, Probes. (jg).

Advanced Fragmentation Methods in Biomolecular Mass Spectrometry

Advanced Fragmentation Methods in Biomolecular Mass Spectrometry PDF Author: Frederik Lermyte
Publisher: Royal Society of Chemistry
ISBN: 1839161108
Category : Science
Languages : en
Pages : 359

Book Description
Breaking down large biomolecules into fragments in a controlled manner is key to modern biomolecular mass spectrometry. This book is a high-level introduction, as well as a reference work for experienced users, to ECD, ETD, EDD, NETD, UVPD, SID, and other advanced fragmentation methods. It provides a comprehensive overview of their history, mechanisms, instrumentation, and key applications. With contributions from leading experts, this book will act as an authoritative guide to these methods. Aimed at postgraduate and professional researchers, mainly in academia, but also in industry, it can be used as supplementary reading for advanced students on mass spectrometry or analytical (bio)chemistry courses.

Low Pressure Infrared Multiple-photon Dissociation Dynamics of Gaseous Ion-molecule Complexes

Low Pressure Infrared Multiple-photon Dissociation Dynamics of Gaseous Ion-molecule Complexes PDF Author:
Publisher:
ISBN:
Category :
Languages : en
Pages :

Book Description


Gas-Phase IR Spectroscopy and Structure of Biological Molecules

Gas-Phase IR Spectroscopy and Structure of Biological Molecules PDF Author: Anouk M. Rijs
Publisher: Springer
ISBN: 3319192043
Category : Science
Languages : en
Pages : 409

Book Description
The series Topics in Current Chemistry presents critical reviews of the present and future trends in modern chemical research. The scope of coverage is all areas of chemical science including the interfaces with related disciplines such as biology, medicine and materials science. The goal of each thematic volume is to give the non-specialist reader, whether in academia or industry, a comprehensive insight into an area where new research is emerging which is of interest to a larger scientific audience. Each review within the volume critically surveys one aspect of that topic and places it within the context of the volume as a whole. The most significant developments of the last 5 to 10 years are presented using selected examples to illustrate the principles discussed. The coverage is not intended to be an exhaustive summary of the field or include large quantities of data, but should rather be conceptual, concentrating on the methodological thinking that will allow the non-specialist reader to understand the information presented. Contributions also offer an outlook on potential future developments in the field. Review articles for the individual volumes are invited by the volume editors. Readership: research chemists at universities or in industry, graduate students.

Structures of Gaseous Ions by Infrared Multiple Photon Dissociation (IRMPD) Spectroscopy

Structures of Gaseous Ions by Infrared Multiple Photon Dissociation (IRMPD) Spectroscopy PDF Author: Khadjch Rajabi
Publisher:
ISBN:
Category :
Languages : en
Pages : 560

Book Description


Infrared Multiple Photon Dissociation Spectra of Gaseous Ions

Infrared Multiple Photon Dissociation Spectra of Gaseous Ions PDF Author: Dilrukshi Manjalika Patuwathavithana Peiris
Publisher:
ISBN:
Category : Fourier transformations
Languages : en
Pages : 316

Book Description


Investigation of Gas-phase Metal Ion Complexes Using Infrared Multiple Photon Dissociation Spectroscopy and Density Functional Theory Calculations

Investigation of Gas-phase Metal Ion Complexes Using Infrared Multiple Photon Dissociation Spectroscopy and Density Functional Theory Calculations PDF Author: Ryan Patrick Dain
Publisher:
ISBN:
Category : Electronic dissertations
Languages : en
Pages : 76

Book Description
A combination of theoretical chemistry and "action" spectroscopy has become the most used tool for the exploration of gas-phase molecular ions. In this study, density functional theory (DFT) calculations were used to test the validity of conclusions drawn from the results of a matrix-isolation infrared (MI-IR) experiment and develop a modeling method that could be used for metal-coordinating chlorate ion pairs. That modeling method was then used in comparison with experimental infrared multiple photon dissociation (IRMPD) spectroscopy to determine the structures of metal-chlorate anions. In addition to structural information, the effect of the modeling method on spectral correlation was also investigated.

Reaction Dynamics Involving Ions, Radicals, Neutral and Excited Species

Reaction Dynamics Involving Ions, Radicals, Neutral and Excited Species PDF Author: Stefano Falcinelli
Publisher: Frontiers Media SA
ISBN: 2889634302
Category :
Languages : en
Pages : 345

Book Description


Structures of Gaseous Ions by Infrared Multiple Photon Dissociation (IRMPD) Spectroscopy

Structures of Gaseous Ions by Infrared Multiple Photon Dissociation (IRMPD) Spectroscopy PDF Author: Khadjch Rajabi
Publisher:
ISBN:
Category : Infrared spectroscopy
Languages : en
Pages : 0

Book Description