Macroscopic and microscopic simulation methods as applied to biological macromolecules PDF Download

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Macroscopic and microscopic simulation methods as applied to biological macromolecules

Macroscopic and microscopic simulation methods as applied to biological macromolecules PDF Author: Teresa L. Head-Gordon
Publisher:
ISBN:
Category :
Languages : en
Pages : 0

Book Description


Macroscopic and microscopic simulation methods as applied to biological macromolecules

Macroscopic and microscopic simulation methods as applied to biological macromolecules PDF Author: Teresa L. Head-Gordon
Publisher:
ISBN:
Category :
Languages : en
Pages : 0

Book Description


Molecular Simulations

Molecular Simulations PDF Author: Saman Alavi
Publisher: John Wiley & Sons
ISBN: 3527341056
Category : Technology & Engineering
Languages : en
Pages : 342

Book Description
Provides hands-on knowledge enabling students of and researchers in chemistry, biology, and engineering to perform molecular simulations This book introduces the fundamentals of molecular simulations for a broad, practice-oriented audience and presents a thorough overview of the underlying concepts. It covers classical mechanics for many-molecule systems as well as force-field models in classical molecular dynamics; introduces probability concepts and statistical mechanics; and analyzes numerous simulation methods, techniques, and applications. Molecular Simulations: Fundamentals and Practice starts by covering Newton's equations, which form the basis of classical mechanics, then continues on to force-field methods for modelling potential energy surfaces. It gives an account of probability concepts before subsequently introducing readers to statistical and quantum mechanics. In addition to Monte-Carlo methods, which are based on random sampling, the core of the book covers molecular dynamics simulations in detail and shows how to derive critical physical parameters. It finishes by presenting advanced techniques, and gives invaluable advice on how to set up simulations for a diverse range of applications. -Addresses the current need of students of and researchers in chemistry, biology, and engineering to understand and perform their own molecular simulations -Covers the nitty-gritty ? from Newton's equations and classical mechanics over force-field methods, potential energy surfaces, and probability concepts to statistical and quantum mechanics -Introduces physical, chemical, and mathematical background knowledge in direct relation with simulation practice -Highlights deterministic approaches and random sampling (eg: molecular dynamics versus Monte-Carlo methods) -Contains advanced techniques and practical advice for setting up different simulations to prepare readers entering this exciting field Molecular Simulations: Fundamentals and Practice is an excellent book benefitting chemist, biologists, engineers as well as materials scientists and those involved in biotechnology.

Molecular Simulations

Molecular Simulations PDF Author: Saman Alavi
Publisher: John Wiley & Sons
ISBN: 3527699538
Category : Technology & Engineering
Languages : en
Pages : 346

Book Description
Provides hands-on knowledge enabling students of and researchers in chemistry, biology, and engineering to perform molecular simulations This book introduces the fundamentals of molecular simulations for a broad, practice-oriented audience and presents a thorough overview of the underlying concepts. It covers classical mechanics for many-molecule systems as well as force-field models in classical molecular dynamics; introduces probability concepts and statistical mechanics; and analyzes numerous simulation methods, techniques, and applications. Molecular Simulations: Fundamentals and Practice starts by covering Newton's equations, which form the basis of classical mechanics, then continues on to force-field methods for modelling potential energy surfaces. It gives an account of probability concepts before subsequently introducing readers to statistical and quantum mechanics. In addition to Monte-Carlo methods, which are based on random sampling, the core of the book covers molecular dynamics simulations in detail and shows how to derive critical physical parameters. It finishes by presenting advanced techniques, and gives invaluable advice on how to set up simulations for a diverse range of applications. -Addresses the current need of students of and researchers in chemistry, biology, and engineering to understand and perform their own molecular simulations -Covers the nitty-gritty ? from Newton's equations and classical mechanics over force-field methods, potential energy surfaces, and probability concepts to statistical and quantum mechanics -Introduces physical, chemical, and mathematical background knowledge in direct relation with simulation practice -Highlights deterministic approaches and random sampling (eg: molecular dynamics versus Monte-Carlo methods) -Contains advanced techniques and practical advice for setting up different simulations to prepare readers entering this exciting field Molecular Simulations: Fundamentals and Practice is an excellent book benefitting chemist, biologists, engineers as well as materials scientists and those involved in biotechnology.

Handbook of Physics in Medicine and Biology

Handbook of Physics in Medicine and Biology PDF Author: Robert Splinter
Publisher: CRC Press
ISBN: 142007525X
Category : Science
Languages : en
Pages : 550

Book Description
In considering ways that physics has helped advance biology and medicine, what typically comes to mind are the various tools used by researchers and clinicians. We think of the optics put to work in microscopes, endoscopes, and lasers; the advanced diagnostics permitted through magnetic, x-ray, and ultrasound imaging; and even the nanotools, that a

Equilibria and Kinetics of Biological Macromolecules

Equilibria and Kinetics of Biological Macromolecules PDF Author: Prof. Jan Hermans
Publisher: John Wiley & Sons
ISBN: 1118733770
Category : Science
Languages : en
Pages : 411

Book Description
Progressively builds a deep understanding of macromolecular behavior Based on each of the authors' roughly forty years of biophysics research and teaching experience, this text instills readers with a deep understanding of the biophysics of macromolecules. It sets a solid foundation in the basics by beginning with core physical concepts such as thermodynamics, quantum chemical models, molecular structure and interactions, and water and the hydrophobic effect. Next, the book examines statistical mechanics, protein-ligand binding, and conformational stability. Finally, the authors address kinetics and equilibria, exploring underlying theory, protein folding, and stochastic models. With its strong emphasis on molecular interactions, Equilibria and Kinetics of Biological Macromolecules offers new insights and perspectives on proteins and other macromolecules. The text features coverage of: Basic theory, applications, and new research findings Related topics in thermodynamics, quantum mechanics, statistical mechanics, and molecular simulations Principles and applications of molecular simulations in a dedicated chapter and interspersed throughout the text Macromolecular binding equilibria from the perspective of statistical mechanics Stochastic processes related to macromolecules Suggested readings at the end of each chapter include original research papers, reviews and monographs, enabling readers to explore individual topics in greater depth. At the end of the text, ten appendices offer refreshers on mathematical treatments, including probability, computational methods, Poisson equations, and defining molecular boundaries. With its classroom-tested pedagogical approach, Equilibria and Kinetics of Biological Macromolecules is recommended as a graduate-level textbook for biophysics courses and as a reference for researchers who want to strengthen their understanding of macromolecular behavior.

Applied Chemistry and Chemical Engineering, Volume 5

Applied Chemistry and Chemical Engineering, Volume 5 PDF Author: A. K. Haghi
Publisher: CRC Press
ISBN: 1351770527
Category : Science
Languages : en
Pages : 353

Book Description
This volume, Applied Chemistry and Chemical Engineering, Volume 5: Research Methodologies in Modern Chemistry and Applied Science, is designed to fulfill the requirements of scientists and engineers who wish to be able to carry out experimental research in chemistry and applied science using modern methods. Each chapter describes the principle of the respective method, as well as the detailed procedures of experiments with examples of actual applications. Thus, readers will be able to apply the concepts as described in the book to their own experiments. This book traces the progress made in this field and its sub-fields and also highlight some of the key theories and their applications and will be a valuable resource for chemical engineers in Materials Science and others.

Multi-Agent-Based Simulations Applied to Biological and Environmental Systems

Multi-Agent-Based Simulations Applied to Biological and Environmental Systems PDF Author: Adamatti, Diana Francisca
Publisher: IGI Global
ISBN: 152251757X
Category : Computers
Languages : en
Pages : 428

Book Description
The discovery and development of new computational methods have expanded the capabilities and uses of simulations. With agent-based models, the applications of computer simulations are significantly enhanced. Multi-Agent-Based Simulations Applied to Biological and Environmental Systems is a pivotal reference source for the latest research on the implementation of autonomous agents in computer simulation paradigms. Featuring extensive coverage on relevant applications, such as biodiversity conservation, pollution reduction, and environmental risk assessment, this publication is an ideal source for researchers, academics, engineers, practitioners, and professionals seeking material on various issues surrounding the use of agent-based simulations.

Biomedical Image Analysis and Mining Techniques for Improved Health Outcomes

Biomedical Image Analysis and Mining Techniques for Improved Health Outcomes PDF Author: KarĂ¢a, Wahiba Ben Abdessalem
Publisher: IGI Global
ISBN: 1466688122
Category : Medical
Languages : en
Pages : 441

Book Description
Every second, users produce large amounts of image data from medical and satellite imaging systems. Image mining techniques that are capable of extracting useful information from image data are becoming increasingly useful, especially in medicine and the health sciences. Biomedical Image Analysis and Mining Techniques for Improved Health Outcomes addresses major techniques regarding image processing as a tool for disease identification and diagnosis, as well as treatment recommendation. Highlighting current research intended to advance the medical field, this publication is essential for use by researchers, advanced-level students, academicians, medical professionals, and technology developers. An essential addition to the reference material available in the field of medicine, this timely publication covers a range of applied research on data mining, image processing, computational simulation, data visualization, and image retrieval.

Applying Molecular and Materials Modeling

Applying Molecular and Materials Modeling PDF Author: Phillip R. Westmoreland
Publisher: Springer Science & Business Media
ISBN: 9401707650
Category : Science
Languages : en
Pages : 596

Book Description
Computational molecular and materials modeling has emerged to deliver solid technological impacts in the chemical, pharmaceutical, and materials industries. It is not the all-predictive science fiction that discouraged early adopters in the 1980s. Rather, it is proving a valuable aid to designing and developing new products and processes. People create, not computers, and these tools give them qualitative relations and quantitative properties that they need to make creative decisions. With detailed analysis and examples from around the world, Applying Molecular and Materials Modeling describes the science, applications, and infrastructures that have proven successful. Computational quantum chemistry, molecular simulations, informatics, desktop graphics, and high-performance computing all play important roles. At the same time, the best technology requires the right practitioners, the right organizational structures, and - most of all - a clearly understood blend of imagination and realism that propels technological advances. This book is itself a powerful tool to help scientists, engineers, and managers understand and take advantage of these advances.

Cellular Automaton Modeling of Biological Pattern Formation

Cellular Automaton Modeling of Biological Pattern Formation PDF Author: Andreas Deutsch
Publisher: Springer Science & Business Media
ISBN: 0817644156
Category : Science
Languages : en
Pages : 331

Book Description
This book focuses on a challenging application field of cellular automata: pattern formation in biological systems, such as the growth of microorganisms, dynamics of cellular tissue and tumors, and formation of pigment cell patterns. These phenomena, resulting from complex cellular interactions, cannot be deduced solely from experimental analysis, but can be more easily examined using mathematical models, in particular, cellular automaton models. While there are various books treating cellular automaton modeling, this interdisciplinary work is the first one covering biological applications. The book is aimed at researchers, practitioners, and students in applied mathematics, mathematical biology, computational physics, bioengineering, and computer science interested in a cellular automaton approach to biological modeling.