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Author: J. Andrew Royle Publisher: Elsevier ISBN: 0080559255 Category : Science Languages : en Pages : 463
Book Description
A guide to data collection, modeling and inference strategies for biological survey data using Bayesian and classical statistical methods.This book describes a general and flexible framework for modeling and inference in ecological systems based on hierarchical models, with a strict focus on the use of probability models and parametric inference. Hierarchical models represent a paradigm shift in the application of statistics to ecological inference problems because they combine explicit models of ecological system structure or dynamics with models of how ecological systems are observed. The principles of hierarchical modeling are developed and applied to problems in population, metapopulation, community, and metacommunity systems. The book provides the first synthetic treatment of many recent methodological advances in ecological modeling and unifies disparate methods and procedures.The authors apply principles of hierarchical modeling to ecological problems, including * occurrence or occupancy models for estimating species distribution* abundance models based on many sampling protocols, including distance sampling* capture-recapture models with individual effects* spatial capture-recapture models based on camera trapping and related methods* population and metapopulation dynamic models* models of biodiversity, community structure and dynamics - Wide variety of examples involving many taxa (birds, amphibians, mammals, insects, plants) - Development of classical, likelihood-based procedures for inference, as well as Bayesian methods of analysis - Detailed explanations describing the implementation of hierarchical models using freely available software such as R and WinBUGS - Computing support in technical appendices in an online companion web site
Author: J. Andrew Royle Publisher: Elsevier ISBN: 0080559255 Category : Science Languages : en Pages : 463
Book Description
A guide to data collection, modeling and inference strategies for biological survey data using Bayesian and classical statistical methods.This book describes a general and flexible framework for modeling and inference in ecological systems based on hierarchical models, with a strict focus on the use of probability models and parametric inference. Hierarchical models represent a paradigm shift in the application of statistics to ecological inference problems because they combine explicit models of ecological system structure or dynamics with models of how ecological systems are observed. The principles of hierarchical modeling are developed and applied to problems in population, metapopulation, community, and metacommunity systems. The book provides the first synthetic treatment of many recent methodological advances in ecological modeling and unifies disparate methods and procedures.The authors apply principles of hierarchical modeling to ecological problems, including * occurrence or occupancy models for estimating species distribution* abundance models based on many sampling protocols, including distance sampling* capture-recapture models with individual effects* spatial capture-recapture models based on camera trapping and related methods* population and metapopulation dynamic models* models of biodiversity, community structure and dynamics - Wide variety of examples involving many taxa (birds, amphibians, mammals, insects, plants) - Development of classical, likelihood-based procedures for inference, as well as Bayesian methods of analysis - Detailed explanations describing the implementation of hierarchical models using freely available software such as R and WinBUGS - Computing support in technical appendices in an online companion web site
Author: Marc Kéry Publisher: Academic Press ISBN: 0128014865 Category : Science Languages : en Pages : 810
Book Description
Applied Hierarchical Modeling in Ecology: Distribution, Abundance, Species Richness offers a new synthesis of the state-of-the-art of hierarchical models for plant and animal distribution, abundance, and community characteristics such as species richness using data collected in metapopulation designs. These types of data are extremely widespread in ecology and its applications in such areas as biodiversity monitoring and fisheries and wildlife management. This first volume explains static models/procedures in the context of hierarchical models that collectively represent a unified approach to ecological research, taking the reader from design, through data collection, and into analyses using a very powerful class of models. Applied Hierarchical Modeling in Ecology, Volume 1 serves as an indispensable manual for practicing field biologists, and as a graduate-level text for students in ecology, conservation biology, fisheries/wildlife management, and related fields. - Provides a synthesis of important classes of models about distribution, abundance, and species richness while accommodating imperfect detection - Presents models and methods for identifying unmarked individuals and species - Written in a step-by-step approach accessible to non-statisticians and provides fully worked examples that serve as a template for readers' analyses - Includes companion website containing data sets, code, solutions to exercises, and further information
Author: Eric Parent Publisher: CRC Press ISBN: 1584889195 Category : Mathematics Languages : en Pages : 429
Book Description
Making statistical modeling and inference more accessible to ecologists and related scientists, Introduction to Hierarchical Bayesian Modeling for Ecological Data gives readers a flexible and effective framework to learn about complex ecological processes from various sources of data. It also helps readers get started on building their own statistical models. The text begins with simple models that progressively become more complex and realistic through explanatory covariates and intermediate hidden states variables. When fitting the models to data, the authors gradually present the concepts and techniques of the Bayesian paradigm from a practical point of view using real case studies. They emphasize how hierarchical Bayesian modeling supports multidimensional models involving complex interactions between parameters and latent variables. Data sets, exercises, and R and WinBUGS codes are available on the authors’ website. This book shows how Bayesian statistical modeling provides an intuitive way to organize data, test ideas, investigate competing hypotheses, and assess degrees of confidence of predictions. It also illustrates how conditional reasoning can dismantle a complex reality into more understandable pieces. As conditional reasoning is intimately linked with Bayesian thinking, considering hierarchical models within the Bayesian setting offers a unified and coherent framework for modeling, estimation, and prediction.
Author: Marc Kéry Publisher: Academic Press ISBN: 0128097272 Category : Nature Languages : en Pages : 822
Book Description
Applied Hierarchical Modeling in Ecology: Analysis of Distribution, Abundance and Species Richness in R and BUGS, Volume Two: Dynamic and Advanced Models provides a synthesis of the state-of-the-art in hierarchical models for plant and animal distribution, also focusing on the complex and more advanced models currently available. The book explains all procedures in the context of hierarchical models that represent a unified approach to ecological research, thus taking the reader from design, through data collection, and into analyses using a very powerful way of synthesizing data. - Makes ecological modeling accessible to people who are struggling to use complex or advanced modeling programs - Synthesizes current ecological models and explains how they are inter-connected - Contains numerous examples throughout the book, walking the reading through scenarios with both real and simulated data - Provides an ideal resource for ecologists working in R software and in BUGS software for more flexible Bayesian analyses
Author: N. Thompson Hobbs Publisher: Princeton University Press ISBN: 1400866553 Category : Science Languages : en Pages : 315
Book Description
Bayesian modeling has become an indispensable tool for ecological research because it is uniquely suited to deal with complexity in a statistically coherent way. This textbook provides a comprehensive and accessible introduction to the latest Bayesian methods—in language ecologists can understand. Unlike other books on the subject, this one emphasizes the principles behind the computations, giving ecologists a big-picture understanding of how to implement this powerful statistical approach. Bayesian Models is an essential primer for non-statisticians. It begins with a definition of probability and develops a step-by-step sequence of connected ideas, including basic distribution theory, network diagrams, hierarchical models, Markov chain Monte Carlo, and inference from single and multiple models. This unique book places less emphasis on computer coding, favoring instead a concise presentation of the mathematical statistics needed to understand how and why Bayesian analysis works. It also explains how to write out properly formulated hierarchical Bayesian models and use them in computing, research papers, and proposals. This primer enables ecologists to understand the statistical principles behind Bayesian modeling and apply them to research, teaching, policy, and management. Presents the mathematical and statistical foundations of Bayesian modeling in language accessible to non-statisticians Covers basic distribution theory, network diagrams, hierarchical models, Markov chain Monte Carlo, and more Deemphasizes computer coding in favor of basic principles Explains how to write out properly factored statistical expressions representing Bayesian models
Author: Sudipto Banerjee Publisher: CRC Press ISBN: 020348780X Category : Mathematics Languages : en Pages : 470
Book Description
Among the many uses of hierarchical modeling, their application to the statistical analysis of spatial and spatio-temporal data from areas such as epidemiology And environmental science has proven particularly fruitful. Yet to date, the few books that address the subject have been either too narrowly focused on specific aspects of spatial analysis,
Author: Otso Ovaskainen Publisher: Cambridge University Press ISBN: 1108492460 Category : Nature Languages : en Pages : 389
Book Description
A comprehensive account of joint species distribution modelling, covering statistical analyses in light of modern community ecology theory.
Author: Marc Kéry Publisher: Academic Press ISBN: 0123786061 Category : Science Languages : en Pages : 321
Book Description
Introduction to WinBUGS for Ecologists introduces applied Bayesian modeling to ecologists using the highly acclaimed, free WinBUGS software. It offers an understanding of statistical models as abstract representations of the various processes that give rise to a data set. Such an understanding is basic to the development of inference models tailored to specific sampling and ecological scenarios. The book begins by presenting the advantages of a Bayesian approach to statistics and introducing the WinBUGS software. It reviews the four most common statistical distributions: the normal, the uniform, the binomial, and the Poisson. It describes the two different kinds of analysis of variance (ANOVA): one-way and two- or multiway. It looks at the general linear model, or ANCOVA, in R and WinBUGS. It introduces generalized linear model (GLM), i.e., the extension of the normal linear model to allow error distributions other than the normal. The GLM is then extended contain additional sources of random variation to become a generalized linear mixed model (GLMM) for a Poisson example and for a binomial example. The final two chapters showcase two fairly novel and nonstandard versions of a GLMM. The first is the site-occupancy model for species distributions; the second is the binomial (or N-) mixture model for estimation and modeling of abundance. - Introduction to the essential theories of key models used by ecologists - Complete juxtaposition of classical analyses in R and Bayesian analysis of the same models in WinBUGS - Provides every detail of R and WinBUGS code required to conduct all analyses - Companion Web Appendix that contains all code contained in the book and additional material (including more code and solutions to exercises)
Author: James Samuel Clark Publisher: Oxford University Press, USA ISBN: 019856967X Category : Computers Languages : en Pages : 216
Book Description
New statistical tools are changing the ways in which scientists analyze and interpret data and models. Many of these are emerging as a result of the wide availability of inexpensive, high speed computational power. In particular, hierarchical Bayes and Markov Chain Monte Carlo methods for analysis provide consistent framework for inference and prediction where information is heterogeneous and uncertain, processes are complex, and responses depend on scale. Nowhere are these methods more promising than in the environmental sciences. Models have developed rapidly, and there is now a requirement for a clear exposition of the methodology through to application for a range of environmental challenges.
Author: James S. Clark Publisher: Princeton University Press ISBN: 0691220123 Category : Science Languages : en Pages : 634
Book Description
The environmental sciences are undergoing a revolution in the use of models and data. Facing ecological data sets of unprecedented size and complexity, environmental scientists are struggling to understand and exploit powerful new statistical tools for making sense of ecological processes. In Models for Ecological Data, James Clark introduces ecologists to these modern methods in modeling and computation. Assuming only basic courses in calculus and statistics, the text introduces readers to basic maximum likelihood and then works up to more advanced topics in Bayesian modeling and computation. Clark covers both classical statistical approaches and powerful new computational tools and describes how complexity can motivate a shift from classical to Bayesian methods. Through an available lab manual, the book introduces readers to the practical work of data modeling and computation in the language R. Based on a successful course at Duke University and National Science Foundation-funded institutes on hierarchical modeling, Models for Ecological Data will enable ecologists and other environmental scientists to develop useful models that make sense of ecological data. Consistent treatment from classical to modern Bayes Underlying distribution theory to algorithm development Many examples and applications Does not assume statistical background Extensive supporting appendixes Lab manual in R is available separately
Author: J. Andrew Royle
Author: J. Andrew Royle
Author: Marc Kéry
Author: Eric Parent
Author: Marc Kéry
Author: N. Thompson Hobbs
Author: Sudipto Banerjee
Author: Otso Ovaskainen
Author: Marc Kéry
Author: James Samuel Clark
Author: James S. Clark