Genetic Stock Composition Analysis of the Chinook Salmon (Oncorhynchus Tshawytscha) Bycatch from the 2016 Bering Sea Walleye Pollock (Gadus Chalcogrammus) Trawl Fishery PDF Download

Author: Charles. M. Guthrie
Publisher:
ISBN:
Category : Bycatches (Fisheries)
Languages : en
Pages : 32

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Book Description
A genetic analysis of samples from the Chinook salmon (Oncorhynchus tshawytscha) bycatch of the 2016 Bering Sea-Aleutian Island (BSAI) trawl fishery for walleye pollock (Gadus chalcogrammus) was undertaken to determine the overall stock composition of the bycatch. Samples were genotyped for 43 single nucleotide polymorphism (SNP) DNA markers and results were estimated using the Alaska Department of Fish and Game (ADF&G) SNP baseline. In 2016, genetic samples from the Bering Sea were collected using a systematic random sampling protocol where one out of every 10 Chinook salmon encountered was sampled. Based on the analysis of 1,910 Chinook salmon bycatch samples collected throughout the 2016 BSAI walleye pollock trawl fishery, Coastal Western Alaska and British Columbia regions (34% and 29% respectively) dominated the sample set with smaller contributions from West Coast US (14%), and North Alaska Peninsula (13%) regions. Analysis of temporal groupings within the pollock "A" and "B" seasons revealed changes in stock composition during the course of the year with lower contributions of Coastal Western Alaska and North Alaska Peninsula regions and higher contributions of West Coast US, British Columbia, and NW Gulf of Alaska, regions during the "B" season when compared to the "A" season. . [doi:10.7289/V5/TM-AFSC-365 (https://doi.org/10.7289/V5/TM-AFSC-365)]

Author: Charles. M. Guthrie
Publisher:
ISBN:
Category : Bycatches (Fisheries)
Languages : en
Pages : 33

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Book Description
A genetic analysis of samples from the Chinook salmon (Oncorhynchus tshawytscha) bycatch of the 2015 Bering Sea-Aleutian Island (BSAI) trawl fishery for walleye pollock (Gadus chalcogrammus) was undertaken to determine the overall stock composition of the bycatch. Samples were genotyped for 43 single nucleotide polymorphism (SNP) DNA markers and results were estimated using the Alaska Department of Fish and Game (ADF&G) SNP baseline. In 2015, genetic samples from the Bering Sea were collected using a systematic random sampling protocol where one out of every 10 Chinook salmon encountered was sampled. Based on the analysis of 1,757 Chinook salmon bycatch samples collected throughout the 2015 BSAI walleye pollock trawl fishery, Coastal Western Alaska stocks dominated the sample set (40%) with smaller contributions from British Columbia (22%), West Coast U.S. (WA/OR/CA) (15%), and North Alaska Peninsula (11%) stocks. Analysis of temporal groupings within the pollock "A" and "B" seasons revealed changes in stock composition during the course of the year with lower contributions of Coastal Western Alaska, North Alaska Peninsula, and Upper Yukon stocks and higher contributions of West Coast U.S. (WA/OR/CA), British Columbia, NW Gulf of Alaska, and Coastal Southeast Alaska stocks during the "B" season. [doi:10.7289/V5/TM-AFSC-342 (http://dx.doi.org/10.7289/V5/TM-AFSC-342)]

Author: Charles. M. Guthrie
Publisher:
ISBN:
Category : Bycatches (Fisheries)
Languages : en
Pages : 21

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Book Description
A genetic analysis of samples from the Chinook salmon (Oncorhynchus tshawytscha) bycatch of the 2013 Bering Sea - Aleutian Island (BSAI) trawl fishery for walleye pollock (Gadus chalcogrammus) was undertaken to determine the overall stock composition of the bycatch. Samples were genotyped for 43 single nucleotide polymorphism (SNP) DNA markers and results were estimated using the Alaska Department of Fish and Game (ADF&G) SNP baseline. In 2013, genetic samples from the Bering Sea were collected using a systematic random sampling protocol where one out of every 10 Chinook salmon encountered was sampled. Based on the analysis of 1,246 Chinook salmon bycatch samples collected throughout the 2013 BSAI walleye pollock trawl fishery, Coastal Western Alaska stocks dominated the sample set (50 %) with smaller contributions from British Columbia (16 %), North Alaska Peninsula (14 %), and West Coast U.S. (OR/CA/WA) (7 %) stocks. Analysis of temporal groupings within the pollock "A" and "B" seasons revealed changes in stock composition during the course of the year with lower contributions of North Alaska Peninsula and Upper Yukon stocks and higher contributions of West Coast U.S. and NW Gulf of Alaska stocks during the "B" season .

Author: Jeffrey Robert Guyon
Publisher:
ISBN:
Category : Chinook salmon
Languages : en
Pages : 26

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Book Description
The genetic stock composition of Chinook salmon (Oncorhynchus tshawytscha) samples from the 2012 U.S. Gulf of Alaska (GOA) trawl fishery for walleye pollock (Gadus chalcogrammus) was extended to provide an overall stock composition for the fishery bycatch and stock-specific harvests. Genetic samples were collected opportunistically in 2012 from Chinook salmon taken as the bycatch in this fishery. These samples had previously been genotyped for 43 single nucleotide polymorphism (SNP) DNA markers and the results were estimated using the available coastwide baseline of SNP markers for Chinook salmon. However, the opportunistic nature of the sampling raised concerns about applying the proportional composition of the samples to the entire bycatch because of unknown, but potentially significant, biases. Here we investigate the most appropriate means by which this extension can be made. While sample sizes varied widely and did not achieve the 10% target used to sample bycatch in the Bering Sea, using a stratified estimator weighted by stratum-specific bycatch, it was possible to estimate the stock composition of the total catch with acceptable accuracy and precision. Based on the re analysis of 948 Chinook salmon bycatch samples, the proportions o f reporting groups did not change significantly from previously published values: British Columbia (50%), U.S. West Coast (28%), and coastal Southeast Alaska (19 %) made up the largest reporting groups.

Author: Charles. M. Guthrie
Publisher:
ISBN:
Category : Bycatches (Fisheries)
Languages : en
Pages : 33

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Book Description
A genetic analysis of samples from the Chinook salmon (Oncorhynchus tshawytscha) bycatch of the 2012 Bering Sea-Aleutian Island (BSAI) and Gulf of Alaska (GOA) trawl fisheries for walleye pollock (Gadus chalcogrammus) was undertaken to determine the stock composition of the sample set. Samples were genotyped for 43 single nucleotide polymorphism (SNP) DNA markers and results were estimated using the Alaska Department of Fish and Game (ADF&G) SNP baseline. In 2012, genetic samples from the Bering Sea were collected using a systematic random sampling protocol where one out of every 10 Chinook salmon encountered was sampled. Based on the analysis of 1,111 Chinook salmon bycatch samples collected throughout the 2012 BSAI walleye pollock trawl fishery, Coastal Western Alaska stocks dominated the sample set (63%) with smaller contributions from North Alaska Peninsula (11%), British Columbia (10%), and West Coast U.S. (OR/CA/WA) (7%) stocks.

Author: Charles. M. Guthrie
Publisher:
ISBN:
Category : Bycatches (Fisheries)
Languages : en
Pages : 32

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Book Description
A genetic analysis of samples from the Chinook salmon (Oncorhynchus tshawytscha) Prohibited Species Catch (bycatch) of the 2016 Gulf of Alaska (GOA) trawl fisheries for walleye pollock (Gadus chalcogrammus) and rockfish (Sebastes spp.), was undertaken to determine the stock composition of the sample sets. Samples were genotyped for 43 single nucleotide polymorphism (SNP) DNA markers and results were estimated using the Alaska Department of Fish and Game SNP baseline. In 2016, genetic samples were collected from Chinook salmon taken in the bycatch of the GOA pollock trawl fisheries using a simple random sample protocol with trip being the primary unit. This was the third year for this sampling protocol and which resulted in the largest available genetic sample set to date with 24% of the estimated salmon bycatch from the pollock fishery successfully genotyped. Based on analysis of 4,962 Chinook salmon bycatch samples, British Columbia (42%), West Coast US (40%), and Coastal Southeast Alaska (15%) comprised the largest stock groups, at an estimated 8,602, 8,301, and 3,080 Chinook salmon, respectively, out of 20,589 fish total. In 2016, genetic samples from the bycatch of the GOA rockfish CV fishery were collected by the fishing industry using a census sampling protocol. Based on the genotyping of 493 Chinook salmon bycatch samples collected from this fishery in NMFS Statistical Areas 620 and 630, West Coast US stocks represented the largest stock group (62%) with smaller contributions from British Columbia (27%), Coastal Southeast Alaska (7%), and Northwest GOA (4%) stock groups.

Author: Charles. M. Guthrie
Publisher:
ISBN:
Category : Bycatches (Fisheries)
Languages : en
Pages : 31

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Book Description
A genetic analysis of samples from the Chinook salmon (Oncorhynchus tshawytscha) bycatch of the 2014 Gulf of Alaska (GOA) trawl fisheries for walleye pollock (Gadus chalcogrammus), rockfish (Sebastes spp.), and arrowtooth flounder (Atheresthes stomias) was undertaken to determine the stock composition of the sample sets. Samples were genotyped for 43 single nucleotide polymorphism (SNP) DNA markers and results were estimated using the Alaska Department of Fish and Game (ADF&G) SNP baseline. In 2014, genetic samples were collected from Chinook salmon taken in the bycatch of the Gulf of Alaska (GOA) pollock trawl fisheries using a simple random sample protocol with trip being the primary unit. This is the first year for this sampling protocol and resulted in the largest available genetic sample set to date with 10.7% of the salmon bycatch successfully genotyped. Based on the analysis of 1,163 Chinook salmon bycatch samples, British Columbia (43%), West Coast U.S. (35%), Coastal Southeast Alaska (16%), and Northwest Gulf of Alaska stocks (5%) comprised the largest stock groups. Weighting the available sample sets to the total bycatch by season and statistical area did not appreciably change the overall stock composition. In 2014, genetic samples from the bycatch of the rockfish catcher vessel (CV) fishery in the central GOA were collected by the fishing industry using a census sampling protocol where every Chinook salmon encountered was sampled. Based on the genotyping of 398 Chinook salmon bycatch samples collected from the 2014 GOA rockfish CV trawl fishery in NMFS Statistical Areas 620 and 630, West Coast U.S. stocks (WA/OR/CA) represented the largest stock grouping (72%) with smaller contributions from British Columbia (17%), Coastal Southeast Alaska (7%), and Northwest GOA (3%) stocks. Based on the genotyping of 404 Chinook salmon bycatch samples collected throughout the 2014 GOA arrowtooth flounder trawl fishery from the catcher-processors (CP) FV Vaerdal and FV US Intrepid; West Coast U.S. stocks (WA/OR/CA) represented the largest stock grouping (51%) with smaller contributions from British Columbia (36%), Coastal Southeast Alaska (10%), Northeast GOA (2%) and Northwest GOA (2%) stocks. [doi:10.7289/V5/TM-AFSC-311 (http://dx.doi.org/10.7289/V5/TM-AFSC-311)]

Author: Charles. M. Guthrie
Publisher:
ISBN:
Category : Bycatches (Fisheries)
Languages : en
Pages : 33

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Book Description
A genetic analysis of samples from the Chinook salmon (Oncorhynchus tshawytscha) bycatch of the 2015 Gulf of Alaska (GOA) trawl fisheries for walleye pollock (Gadus chalcogrammus), rockfish (Sebastes spp.), and arrowtooth flounder (Atheresthes stomias) was undertaken to determine the stock composition of the sample sets. Samples were genotyped for 43 single nucleotide polymorphism (SNP) DNA markers and results were estimated using the Alaska Department of Fish and Game (ADF&G) SNP baseline. In 2015, genetic samples were collected from Chinook salmon taken in the bycatch of the Gulf of Alaska (GOA) pollock trawl fisheries using a simple random sample protocol with trip being the primary unit. This is the second year for this sampling protocol and resulted in the largest available genetic sample set to date with 17.8% of the salmon bycatch successfully genotyped. Based on the analysis of 2,414 Chinook salmon bycatch samples, British Columbia (51%), West Coast U.S. (32%), Coastal Southeast Alaska (14%), and Northwest Gulf of Alaska stocks (3%) comprised the largest stock groups. In 2015, genetic samples from the bycatch of the GOA rockfish catcher vessel (CV) fishery were collected by the fishing industry using a census sampling protocol where every Chinook salmon encountered was sampled. Based on the genotyping of 635 Chinook salmon bycatch samples collected from the 2015 GOA rockfish CV trawl fishery in NMFS Statistical Areas 620 and 630, West Coast U.S. stocks (WA/OR/CA) represented the largest stock grouping (73%) with smaller contributions from British Columbia (19%), Coastal Southeast Alaska (5%), and Northwest GOA (3%) stocks. Based on the genotyping of 300 Chinook salmon bycatch samples collected throughout the 2015 GOA arrowtooth flounder trawl fishery from the catcher processors (CP), West Coast U.S. stocks (WA/OR/CA) represented the largest stock grouping. [doi:10.7289/V5/TM-AFSC-343 (http://dx.doi.org/10.7289/V5/TM-AFSC-343)]

Author: Jackie Whittle
Publisher:
ISBN:
Category : Chum salmon
Languages : en
Pages : 58

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Book Description
A genetic analysis of the prohibited species catch (PSC) of chum salmon (Oncorhynchus keta) collected during 2016 from the federally managed walleye pollock (Gadus chalcogrammus) trawl fishery in the Bering Sea and from the federal groundfish fisheries in the Gulf of Alaska (GOA) was undertaken to determine the overall stock composition of the sample sets. Samples were genotyped for 11 microsatellite markers from which stock contributions were estimated using the current chum salmon microsatellite baseline. In 2016, one genetic sample was collected for every 30.6 chum salmon caught in the Bering Sea midwater trawl fishery. The evaluation of sampling in the Bering Sea based on time, location, and vessel indicated that the genetic samples were representative of the total chum salmon PSC in the Bering Sea. The majority of the 114 chum salmon samples from the A-season were from Northeast Asia (37%) and Eastern GOA/Pacific Northwest (PNW) (37%) stocks. Based on the analysis of 2,701 chum salmon collected throughout the B-season, the largest stock groups in the catch were Eastern GOA/PNW (35%) and Northeast Asia (31%), followed by Western Alaska (19%), Southeast Asia (9%), Upper/Middle Yukon (5%), and Southwest Alaska (

Author: Jackie Whittle
Publisher:
ISBN:
Category : Bycatches (Fisheries)
Languages : en
Pages : 50

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Book Description
A genetic analysis of chum salmon (Oncorhynchus keta) bycatch from the 2013 Bering Sea walleye pollock (Gadus chalcogrammus) trawl fishery was undertaken to determine the overall stock composition of the sample set. Samples were genotyped for 11 microsatellite markers and results were estimated using the current chum salmon microsatellite baseline. Since 2011, genetic samples from the chum salmon bycatch were collected systematically to reduce sample biases that may exist in collections from previous years. In 2013, one genetic sample was collected for every 30.3 chum salmon caught in the 99.8% of the mid water trawl fishery that was sampled. Evaluation of sampling based on time, location, and vessel indicated that the genetic samples were representative of the total bycatch. Based on the analysis of 3,880 chum salmon bycatch samples collected throughout the 2013 Bering Sea trawl fishery, the North east Asia stocks dominated the sample set ( 45 %); moderate contributions came from Southeast Asia (15 %), Eastern Gulf of Alaska (GOA)/Pacific Northwest (PNW) (15%), and Western Alaska (18%) stocks, and smaller contributions came from Upper/Middle Yukon River (6 %) and Southwest Alaska (1%) stocks. The regional stock estimates for the 2013 chum salmon bycatch were similar to those for the 2012 bycatch, but differed significantly from estimates for other years, especially for the Asian and the Eastern GOA/PNW regions. There were significant spatial differences in stock distribution with the South east Asia contribution higher in the northwestern U.S. waters of the Bering Sea than in the southeastern Bering Sea, and the Eastern GOA/PNW contribution highest in the easternmost area sampled in the southeastern Bering Sea. Analysis of temporal strata revealed changes in stock composition during the course of the fall "B" season with increasing contribution of Northeast Asia stocks, decreasing contribution of Eastern GOA/PNW stocks, and variable contribution from Southeast Asia and Western Alaska.