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Genetic Connectivity of Dungeness Crab (Cancer Magister) in the California Current System and Puget Sound

Genetic Connectivity of Dungeness Crab (Cancer Magister) in the California Current System and Puget Sound PDF Author: Tyler M. Jackson
Publisher:
ISBN:
Category : Crab populations
Languages : en
Pages : 89

Book Description
Understanding connectivity among exploited populations is critical to their sustainable management and long-term viability. In the marine environment, estimates of connectivity often rely on the use of genetic markers, as dispersal primarily occurs during a planktonic larval phase which is difficult to track using direct methods. In this thesis, we investigated the population genetic structure of the most valuable commercially harvested species on the west coast of the United States, the Dungeness crab (Cancer magister). We utilized both population- and individual-based genetic analyses to establish baseline knowledge of genetic connectivity of Dungeness crab throughout ~1,200 km of the California Current System (CCS) in 2012, and tested for inter-annual variability in our estimates by sampling again in 2014. In 2012, we observed a pattern of isolation by distance despite there being little genetic population structure throughout our study range. In addition, several sites had significant evidence of kin aggregation, which was correlated with genetic differentiation as measured by pairwise FST. In 2014, pairwise FST estimates were noticeably lower, there was no spatial autocorrelation, and fewer sights had significant evidence of kin aggregation. We attributed these findings to increased migrant exchange during potential larval dispersal years, which was mediated by variation in physical oceanographic conditions (i.e. Pacific Decadal Oscillation phase, timing of the spring transition, amount of upwelling during the spring and summer). Dispersal trajectory, and thus gene flow, is likely influenced by variation in physical oceanographic conditions, thereby affecting genetic population structure. Estimates of effective population size (N[subscript E]) indicated that N[subscript E] was large in both 2012 and 2014, but we were unable to discern any change between years. Together, these findings suggest that Dungeness crab in the CCS may constitute a single evolutionary population, though geographically limited dispersal results in isolation by distance. We also evaluated genetic connectivity among Dungeness crab inhabiting a partially enclosed water body, Puget Sound, in comparison to those residing in the coastal ocean. With the exception of Hood Canal, we observed genetic homogeneity within both Puget Sound and coastal Washington. Genetic differentiation between Puget Sound and coastal Washington was variable among sites, therefore genetic connectivity is stronger within either area than between them. Overall, our results suggest that Dungeness crab exemplify characteristics of a ‘high gene flow’ species, despite evidence supporting geographically limited gene flow. Our findings did not indicate that altering the management strategy to reflect discrete genetic subunits or conversation needs (i.e. low genetic diversity) is necessary at this time. In addition, our findings highlight the need for future research to investigate demographic processes that influence gene flow (i.e. dispersal trajectory).

Genetic Connectivity of Dungeness Crab (Cancer Magister) in the California Current System and Puget Sound

Genetic Connectivity of Dungeness Crab (Cancer Magister) in the California Current System and Puget Sound PDF Author: Tyler M. Jackson
Publisher:
ISBN:
Category : Crab populations
Languages : en
Pages : 89

Book Description
Understanding connectivity among exploited populations is critical to their sustainable management and long-term viability. In the marine environment, estimates of connectivity often rely on the use of genetic markers, as dispersal primarily occurs during a planktonic larval phase which is difficult to track using direct methods. In this thesis, we investigated the population genetic structure of the most valuable commercially harvested species on the west coast of the United States, the Dungeness crab (Cancer magister). We utilized both population- and individual-based genetic analyses to establish baseline knowledge of genetic connectivity of Dungeness crab throughout ~1,200 km of the California Current System (CCS) in 2012, and tested for inter-annual variability in our estimates by sampling again in 2014. In 2012, we observed a pattern of isolation by distance despite there being little genetic population structure throughout our study range. In addition, several sites had significant evidence of kin aggregation, which was correlated with genetic differentiation as measured by pairwise FST. In 2014, pairwise FST estimates were noticeably lower, there was no spatial autocorrelation, and fewer sights had significant evidence of kin aggregation. We attributed these findings to increased migrant exchange during potential larval dispersal years, which was mediated by variation in physical oceanographic conditions (i.e. Pacific Decadal Oscillation phase, timing of the spring transition, amount of upwelling during the spring and summer). Dispersal trajectory, and thus gene flow, is likely influenced by variation in physical oceanographic conditions, thereby affecting genetic population structure. Estimates of effective population size (N[subscript E]) indicated that N[subscript E] was large in both 2012 and 2014, but we were unable to discern any change between years. Together, these findings suggest that Dungeness crab in the CCS may constitute a single evolutionary population, though geographically limited dispersal results in isolation by distance. We also evaluated genetic connectivity among Dungeness crab inhabiting a partially enclosed water body, Puget Sound, in comparison to those residing in the coastal ocean. With the exception of Hood Canal, we observed genetic homogeneity within both Puget Sound and coastal Washington. Genetic differentiation between Puget Sound and coastal Washington was variable among sites, therefore genetic connectivity is stronger within either area than between them. Overall, our results suggest that Dungeness crab exemplify characteristics of a ‘high gene flow’ species, despite evidence supporting geographically limited gene flow. Our findings did not indicate that altering the management strategy to reflect discrete genetic subunits or conversation needs (i.e. low genetic diversity) is necessary at this time. In addition, our findings highlight the need for future research to investigate demographic processes that influence gene flow (i.e. dispersal trajectory).

Microsatellite and Mitochondrial DNA Analysis of Dungeness Crab (Cancer Magister) from California to Northern British Columbia

Microsatellite and Mitochondrial DNA Analysis of Dungeness Crab (Cancer Magister) from California to Northern British Columbia PDF Author: Bryan Thomas Barney
Publisher:
ISBN:
Category : Dungeness crab
Languages : en
Pages : 41

Book Description
Genetic variation was assessed using mitochondrial DNA and microsatellite markers from Dungeness crab between Iceberg Bay, British Columbia and San Luis Obispo, California. We found little pattern in overall genetic variation between sites in both marker types, and no significant Isolation by Distance model was fit. Site-specific variation in mitochondrial DNA haplotype frequencies suggested the existence of three subpopulations associated with the Alaska Current, the Puget Sound, and the California Current, but microsatellite DNA evidence did not support it. The ratio between sampling size for microsatellite markers and fragment size polymorphisms was low, limiting the resolving power of microsatellite DNA for neutral variation. Average pairwise Fst values for Iceberg Bay, British Columbia against all other populations was 0.156, as compared to the average pairwise Fst of 0.028 across all populations. In the southern region of the Puget Sound, Nisqually, Washington had a lower pairwise Fst of 0.044 but contained a large number of site-specific, unique mtDNA haplotypes. Additionally, we found 41 mtDNA haplotypes in 445 samples taken, with 23 of those haplotypes as "singletons," suggesting that Dungeness crab went through a recent, post-bottleneck population expansion, likely associated with the most recent glacial relaxation.

A Study of Genetic Variability in Larval and Adult Populations of Dungeness Crab (Cancer Magister)

A Study of Genetic Variability in Larval and Adult Populations of Dungeness Crab (Cancer Magister) PDF Author: Cairbre Fanslow
Publisher:
ISBN:
Category : Dungeness crab
Languages : en
Pages : 84

Book Description
Spatial and temporal genetic variation was assessed using mitochondrial DNA from adult and megalopae of Dungeness crabs, Cancer magister, from Fraser Delta in British Columbia, Washington, Oregon, and California. Megalopae were continuously sampled using light traps in one location, Coos Bay, Oregon, and compared with adults sampled across the species' range. While small-scale spatial and temporal variation were evident, there was no significant fit to the Isolation-by-Distance model when considering adult and larvae populations sampled over a coastal length of ~1700 km (Mantel r = 0.059, p = 0.289). Smaller bays showed higher genetic diversity than larger bays, contrary to typical expectations. MtDNA diversity measures (assessed by canonical correlation analysis) were correlated with bay size and depth, suggesting that hydrological patterns or fishing harvests in local areas (or a combination of both) influenced the observed genetic signature. The Dungeness crab ancestral population likely went through a historic population expansion associated with recent glacial relaxation, as evidenced by mismatch distributions and predominance of singleton haplotypes. In larval samples, we commonly observed numerous individuals of a haplotype, which suggests that families of larvae remain aggregated during dispersal. Sampled offspring revealed a low fraction of the adult gene pool (in accordance with the Hedgecock effect), yet high variability in recruitment over time. A realized long distance dispersal of larvae and the additive effects of recruitment from different sources over time may have prevented significant genetic differentiation within the C. magister range.

Genetic Analysis of Larval Dispersal of Dungeness Crab, Cancer Magister

Genetic Analysis of Larval Dispersal of Dungeness Crab, Cancer Magister PDF Author: Valliammal Chockalingam
Publisher:
ISBN:
Category : Dungeness crab
Languages : en
Pages :

Book Description


Dungeness Crab (Cancer Magister).

Dungeness Crab (Cancer Magister). PDF Author:
Publisher:
ISBN:
Category : Crab fisheries
Languages : en
Pages : 2

Book Description


Biogeographical Genetic Variation of the Dungeness Crab (Cancer Magister)

Biogeographical Genetic Variation of the Dungeness Crab (Cancer Magister) PDF Author: Corinne H. Lardy
Publisher:
ISBN:
Category : Dungeness crab
Languages : en
Pages : 178

Book Description


Abundance, Settlement, Growth, and Habitat Use by Juvenile Dungeness Crab, Cancer Magister, in Inland Waters of Northern Puget Sound, Washington

Abundance, Settlement, Growth, and Habitat Use by Juvenile Dungeness Crab, Cancer Magister, in Inland Waters of Northern Puget Sound, Washington PDF Author: Russell O. McMillan
Publisher:
ISBN:
Category : Dungeness crab
Languages : en
Pages : 53

Book Description


Regional Vulnerability Assessment for the Dungeness Crab (Metacarcinus Magister) to Changing Ocean Conditions Insights From Model Projections and Empirical Experiments

Regional Vulnerability Assessment for the Dungeness Crab (Metacarcinus Magister) to Changing Ocean Conditions Insights From Model Projections and Empirical Experiments PDF Author: Halle Marie Berger
Publisher:
ISBN:
Category : Animal populations
Languages : en
Pages : 0

Book Description
Among global coastal regions, the Northern California Current System (N-CCS) is already experiencing effects from ocean acidification and hypoxia during the summer, primarily due to the region's seasonal upwelling, current systems, and high productivity. Oxygen, pH, and temperature conditions are expected to become more stressful with continued fossil fuel emissions under global climate change, posing a serious threat to the region's fisheries. N-CCS fishing communities rely heavily on the economically and culturally important Dungeness crab (Metacarcinus magister). The fishery is currently sustainably managed, but potential negative impacts from changing ocean conditions on Dungeness crab life stages and populations could have adverse effects for the fishery and the communities that rely on it. To quantify the vulnerability of Dungeness crab life stages and populations to predicted future conditions, both model projections and empirical experiments need to be employed. A semi-quantitative, life stage-specific framework was adapted here to assess the vulnerability of Dungeness crab to low pH, low dissolved oxygen, and high temperature under present and future projected conditions in the seasonally dynamic N-CCS. This was achieved using a combination of regional ocean models, species distribution maps, larval transport models, a population matrix model, and a literature review. This multi-faceted approach revealed that crab vulnerability to the three climate stressors will increase in the future (year 2100) under the most intense emissions scenario, with vulnerability to low oxygen being the most severe to the N-CCS population overall. Increases in vulnerability were largely driven by the adult life stage, which contributes the most to population growth. Empirical experiments demonstrated that adult crab respiration rates increase exponentially with temperature, potentially making this life stage more susceptible to hypoxia in the future. Together, this work provides novel insights into the effects of changing ocean conditions on Dungeness crab populations, which may help inform fishery management strategies.|Archives and Special Collections at the Thomas J. Dodd Research Center, University of Connecticut Libraries

California's Living Marine Resources

California's Living Marine Resources PDF Author: William S. Leet
Publisher: University Of California, Division of Agriculture and Natural Resources; Califorinia Sea Grant
ISBN: 9781879906570
Category : Nature
Languages : en
Pages : 596

Book Description
This 592-page spiral-bound reference provides a baseline of information for all those involved with managing living marine resources in California and chronicles changes that have occurred in many of the state’s fisheries. Organized by marine ecosystems: bays and estuaries, nearshore and offshore. Includes illustrated species descriptions with details of biological knowledge, fishery history, landings data, population status and references. Also includes sections on marine birds and mammals and appendices containing management considerations (by species), a glossary of technical terms and acronyms and fishing gear illustrations. Jointly produced by the California Sea Grant Extension Program and the California Department of Fish and Game following the passage of the Marine Life Protection Act in January 1999.

Navigating Troubled Waters

Navigating Troubled Waters PDF Author: James R. Mackovjak
Publisher:
ISBN:
Category : Fisheries
Languages : en
Pages : 278

Book Description