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Author: Archana Venkataraman (Ph. D.) Publisher: ISBN: Category : Languages : en Pages : 139
Book Description
Connectivity analysis focuses on the interaction between brain regions. Such relationships inform us about patterns of neural communication and may enhance our understanding of neurological disorders. This thesis proposes a generative framework that uses anatomical and functional connectivity information to find impairments within a clinical population. Anatomical connectivity is measured via Diffusion Weighted Imaging (DWI), and functional connectivity is assessed using resting-state functional Magnetic Resonance Imaging (fMRI). We first develop a probabilistic model to merge information from DWI tractography and resting-state fMRI correlations. Our formulation captures the interaction between hidden templates of anatomical and functional connectivity within the brain. We also present an intuitive extension to population studies and demonstrate that our model learns predictive differences between a control and a schizophrenia population. Furthermore, combining the two modalities yields better results than considering each one in isolation. Although our joint model identifies widespread connectivity patterns influenced by a neurological disorder, the results are difficult to interpret and integrate with our regioncentric knowledge of the brain. To alleviate this problem, we present a novel approach to identify regions associated with the disorder based on connectivity information. Specifically, we assume that impairments of the disorder localize to a small subset of brain regions, which we call disease foci, and affect neural communication to/from these regions. This allows us to aggregate pairwise connectivity changes into a region-based representation of the disease. Once again, we use a probabilistic formulation: latent variables specify a template organization of the brain, which we indirectly observe through resting-state fMRI correlations and DWI tractography. Our inference algorithm simultaneously identifies both the afflicted regions and the network of aberrant functional connectivity. Finally, we extend the region-based model to include multiple collections of foci, which we call disease clusters. Preliminary results suggest that as the number of clusters increases, the refined model explains progressively more of the functional differences between the populations.
Author: Archana Venkataraman (Ph. D.) Publisher: ISBN: Category : Languages : en Pages : 139
Book Description
Connectivity analysis focuses on the interaction between brain regions. Such relationships inform us about patterns of neural communication and may enhance our understanding of neurological disorders. This thesis proposes a generative framework that uses anatomical and functional connectivity information to find impairments within a clinical population. Anatomical connectivity is measured via Diffusion Weighted Imaging (DWI), and functional connectivity is assessed using resting-state functional Magnetic Resonance Imaging (fMRI). We first develop a probabilistic model to merge information from DWI tractography and resting-state fMRI correlations. Our formulation captures the interaction between hidden templates of anatomical and functional connectivity within the brain. We also present an intuitive extension to population studies and demonstrate that our model learns predictive differences between a control and a schizophrenia population. Furthermore, combining the two modalities yields better results than considering each one in isolation. Although our joint model identifies widespread connectivity patterns influenced by a neurological disorder, the results are difficult to interpret and integrate with our regioncentric knowledge of the brain. To alleviate this problem, we present a novel approach to identify regions associated with the disorder based on connectivity information. Specifically, we assume that impairments of the disorder localize to a small subset of brain regions, which we call disease foci, and affect neural communication to/from these regions. This allows us to aggregate pairwise connectivity changes into a region-based representation of the disease. Once again, we use a probabilistic formulation: latent variables specify a template organization of the brain, which we indirectly observe through resting-state fMRI correlations and DWI tractography. Our inference algorithm simultaneously identifies both the afflicted regions and the network of aberrant functional connectivity. Finally, we extend the region-based model to include multiple collections of foci, which we call disease clusters. Preliminary results suggest that as the number of clusters increases, the refined model explains progressively more of the functional differences between the populations.
Author: Shaurabh Nandy Publisher: ISBN: Category : Brain Languages : en Pages :
Book Description
One of the key challenges in the analyses of the human connectome is the development of a systematic framework for representing and evaluating generative models. Network generative models go beyond summary statistics and attempt to identify principles which can account for the complex patterns of network interconnections. In this project, a theoretical framework for generative modeling is developed to formally hypothesize and test organizational principles in human functional brain networks using fMRI data. The framework is based on a Hidden Markov Random Field, a probabilistic graphical model with latent variables, which provides a natural structure to make an explicit distinction between the abstract functional brain networks and the observable fMRI BOLD connectivity matrices. The framework conceptualizes whole-brain functional network topology as probabilistic constraint satisfaction, and allows representation of high dimensional connectivity matrices using low dimensional probability models where model parameters are interpretable as brain network topology constraints. To explicitly illustrate the use of the framework, a small number of hypotheses compiled from the theoretical and empirical literature are mathematically instantiated and tested using resting-state fMRI data. The empirical studies provide further evidence to support two hypothesized principles of functional brain organization; a wiring cost rule where the probability of functional connectivity between brain areas decreases with physical distance, and a common neighbors rule where the probability of functional connectivity between brain areas increases with the number of shared neighbors. Overall, the preliminary empirical studies are encouraging and warrant further development and application of the theoretical framework.
Author: Tianzi Jiang Publisher: Springer ISBN: 364215705X Category : Computers Languages : en Pages : 751
Book Description
The13thInternationalConferenceonMedicalImageComputingandComputer- Assisted Intervention, MICCAI 2010, was held in Beijing, China from 20-24 September,2010.ThevenuewastheChinaNationalConventionCenter(CNCC), China’slargestandnewestconferencecenterwith excellentfacilities andaprime location in the heart of the Olympic Green, adjacent to characteristic constr- tions like the Bird’s Nest (National Stadium) and the Water Cube (National Aquatics Center). MICCAI is the foremost international scienti?c event in the ?eld of medical image computing and computer-assisted interventions. The annual conference has a high scienti?c standard by virtue of the threshold for acceptance, and accordingly MICCAI has built up a track record of attracting leading scientists, engineersandcliniciansfromawiderangeoftechnicalandbiomedicaldisciplines. This year, we received 786 submissions, well in line with the previous two conferences in New York and London. Three program chairs and a program committee of 31 scientists, all with a recognized standing in the ?eld of the conference, were responsible for the selection of the papers. The review process was set up such that each paper was considered by the three program chairs, two program committee members, and a minimum of three external reviewers. The review process was double-blind, so the reviewers did not know the identity of the authors of the submission. After a careful evaluation procedure, in which all controversialand gray area papers were discussed individually, we arrived at a total of 251 accepted papers for MICCAI 2010, of which 45 were selected for podium presentation and 206 for poster presentation. The acceptance percentage (32%) was in keeping with that of previous MICCAI conferences. All 251 papers are included in the three MICCAI 2010 LNCS volumes.
Author: Koichi Sameshima Publisher: CRC Press ISBN: 1439845735 Category : Mathematics Languages : en Pages : 282
Book Description
Interest in brain connectivity inference has become ubiquitous and is now increasingly adopted in experimental investigations of clinical, behavioral, and experimental neurosciences. Methods in Brain Connectivity Inference through Multivariate Time Series Analysis gathers the contributions of leading international authors who discuss different time
Author: Mikhail I. Rabinovich Publisher: MIT Press ISBN: 0262549905 Category : Medical Languages : en Pages : 371
Book Description
Experimental and theoretical approaches to global brain dynamics that draw on the latest research in the field. The consideration of time or dynamics is fundamental for all aspects of mental activity—perception, cognition, and emotion—because the main feature of brain activity is the continuous change of the underlying brain states even in a constant environment. The application of nonlinear dynamics to the study of brain activity began to flourish in the 1990s when combined with empirical observations from modern morphological and physiological observations. This book offers perspectives on brain dynamics that draw on the latest advances in research in the field. It includes contributions from both theoreticians and experimentalists, offering an eclectic treatment of fundamental issues. Topics addressed range from experimental and computational approaches to transient brain dynamics to the free-energy principle as a global brain theory. The book concludes with a short but rigorous guide to modern nonlinear dynamics and their application to neural dynamics.
Author: Markus D. Schirmer Publisher: Academic Press ISBN: 0323852815 Category : Psychology Languages : en Pages : 480
Book Description
Connectome Analysis: Characterization, Methods, and Analysis is a comprehensive companion for the analysis of brain networks, or connectomes. The book provides sources of constituent structural and functional MRI signals, network construction and practices for analysis, cutting-edge methods that address the latest challenges in neuroscience, and the fundamentals of network theory in the context of giving practical methods for building connectomes for analysis. Emphasis is placed on quality control of the individual analysis steps. Subsequent chapters discuss networks in neuroscience in clinical and general populations, including how findings are related to underlying neurophysiology and neuropsychology. This book is aimed at students and early-career researchers in brain connectomics and neuroimaging who have a background in computer science, mathematics and physics, as well as more broadly to neuroscientists and psychologists who want to start incorporating connectomics into their research. Provides practical recommendations on how to construct, assess and analyze brain networks Gives an understanding of all the technical methods for connectome analysis Presents the basic network theoretical principles typically used in neuroscience Covers the latest tools and data repositories that are freely available for the reader to carry out connectomic analyses
Author: Alan Anticevic Publisher: Academic Press ISBN: 0128098260 Category : Medical Languages : en Pages : 334
Book Description
Computational Psychiatry: Mathematical Modeling of Mental Illness is the first systematic effort to bring together leading scholars in the fields of psychiatry and computational neuroscience who have conducted the most impactful research and scholarship in this area. It includes an introduction outlining the challenges and opportunities facing the field of psychiatry that is followed by a detailed treatment of computational methods used in the service of understanding neuropsychiatric symptoms, improving diagnosis and guiding treatments. This book provides a vital resource for the clinical neuroscience community with an in-depth treatment of various computational neuroscience approaches geared towards understanding psychiatric phenomena. Its most valuable feature is a comprehensive survey of work from leaders in this field. Offers an in-depth overview of the rapidly evolving field of computational psychiatry Written for academics, researchers, advanced students and clinicians in the fields of computational neuroscience, clinical neuroscience, psychiatry, clinical psychology, neurology and cognitive neuroscience Provides a comprehensive survey of work from leaders in this field and a presentation of a range of computational psychiatry methods and approaches geared towards a broad array of psychiatric problems
Author: Archana Venkataraman (Ph. D.)
Author: Archana Venkataraman (Ph. D.)
Author: Shaurabh Nandy
Author: Tianzi Jiang
Author: Shuqiang Wang
Author: Koichi Sameshima
Author: Anirban Mukhopadhyay
Author: Mikhail I. Rabinovich
Author: Lilia Costa
Author: Markus D. Schirmer
Author: Alan Anticevic