Multivariate Statistical Machine Learning Methods for Genomic Prediction PDF Download

Author: Osval Antonio Montesinos López
Publisher: Springer Nature
ISBN: 3030890104
Category : Technology & Engineering
Languages : en
Pages : 707

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Book Description
This book is open access under a CC BY 4.0 license This open access book brings together the latest genome base prediction models currently being used by statisticians, breeders and data scientists. It provides an accessible way to understand the theory behind each statistical learning tool, the required pre-processing, the basics of model building, how to train statistical learning methods, the basic R scripts needed to implement each statistical learning tool, and the output of each tool. To do so, for each tool the book provides background theory, some elements of the R statistical software for its implementation, the conceptual underpinnings, and at least two illustrative examples with data from real-world genomic selection experiments. Lastly, worked-out examples help readers check their own comprehension.The book will greatly appeal to readers in plant (and animal) breeding, geneticists and statisticians, as it provides in a very accessible way the necessary theory, the appropriate R code, and illustrative examples for a complete understanding of each statistical learning tool. In addition, it weighs the advantages and disadvantages of each tool.

Author: Stefan Sperlich
Publisher: Physica
ISBN:
Category : Business & Economics
Languages : en
Pages : 196

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Book Description
This selection of articles emerged from different works presented "The Art of Semiparametrics" conference in 2003 in Berlin. It offers a collection of individual works that together show the large spectrum of semiparametric statistics. The book combines theoretical contributions with more applied and empirical studies. Although each article represents an original contribution to its own field, all are written in a self-contained way that may be read by non-experts.

Author: Jian Qing Shi
Publisher: CRC Press
ISBN: 1439837740
Category : Mathematics
Languages : en
Pages : 214

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Book Description
Gaussian Process Regression Analysis for Functional Data presents nonparametric statistical methods for functional regression analysis, specifically the methods based on a Gaussian process prior in a functional space. The authors focus on problems involving functional response variables and mixed covariates of functional and scalar variables.Coveri

Author: Piotr Kokoszka
Publisher: CRC Press
ISBN: 1498746691
Category : Mathematics
Languages : en
Pages : 371

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Book Description
Introduction to Functional Data Analysis provides a concise textbook introduction to the field. It explains how to analyze functional data, both at exploratory and inferential levels. It also provides a systematic and accessible exposition of the methodology and the required mathematical framework. The book can be used as textbook for a semester-long course on FDA for advanced undergraduate or MS statistics majors, as well as for MS and PhD students in other disciplines, including applied mathematics, environmental science, public health, medical research, geophysical sciences and economics. It can also be used for self-study and as a reference for researchers in those fields who wish to acquire solid understanding of FDA methodology and practical guidance for its implementation. Each chapter contains plentiful examples of relevant R code and theoretical and data analytic problems. The material of the book can be roughly divided into four parts of approximately equal length: 1) basic concepts and techniques of FDA, 2) functional regression models, 3) sparse and dependent functional data, and 4) introduction to the Hilbert space framework of FDA. The book assumes advanced undergraduate background in calculus, linear algebra, distributional probability theory, foundations of statistical inference, and some familiarity with R programming. Other required statistics background is provided in scalar settings before the related functional concepts are developed. Most chapters end with references to more advanced research for those who wish to gain a more in-depth understanding of a specific topic.

Author: James Ramsay
Publisher: Springer Science & Business Media
ISBN: 0387981853
Category : Computers
Languages : en
Pages : 213

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Book Description
The book provides an application-oriented overview of functional analysis, with extended and accessible presentations of key concepts such as spline basis functions, data smoothing, curve registration, functional linear models and dynamic systems Functional data analysis is put to work in a wide a range of applications, so that new problems are likely to find close analogues in this book The code in R and Matlab in the book has been designed to permit easy modification to adapt to new data structures and research problems

Author: James Ramsay
Publisher: Springer Science & Business Media
ISBN: 147577107X
Category : Mathematics
Languages : en
Pages : 317

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Book Description
Included here are expressions in the functional domain of such classics as linear regression, principal components analysis, linear modelling, and canonical correlation analysis, as well as specifically functional techniques such as curve registration and principal differential analysis. Data arising in real applications are used throughout for both motivation and illustration, showing how functional approaches allow us to see new things, especially by exploiting the smoothness of the processes generating the data. The data sets exemplify the wide scope of functional data analysis; they are drawn from growth analysis, meteorology, biomechanics, equine science, economics, and medicine. The book presents novel statistical technology while keeping the mathematical level widely accessible. It is designed to appeal to students, applied data analysts, and to experienced researchers; and as such is of value both within statistics and across a broad spectrum of other fields. Much of the material appears here for the first time.

Author: Lajos Horváth
Publisher: Springer Science & Business Media
ISBN: 1461436559
Category : Mathematics
Languages : en
Pages : 426

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Book Description
This book presents recently developed statistical methods and theory required for the application of the tools of functional data analysis to problems arising in geosciences, finance, economics and biology. It is concerned with inference based on second order statistics, especially those related to the functional principal component analysis. While it covers inference for independent and identically distributed functional data, its distinguishing feature is an in depth coverage of dependent functional data structures, including functional time series and spatially indexed functions. Specific inferential problems studied include two sample inference, change point analysis, tests for dependence in data and model residuals and functional prediction. All procedures are described algorithmically, illustrated on simulated and real data sets, and supported by a complete asymptotic theory. The book can be read at two levels. Readers interested primarily in methodology will find detailed descriptions of the methods and examples of their application. Researchers interested also in mathematical foundations will find carefully developed theory. The organization of the chapters makes it easy for the reader to choose an appropriate focus. The book introduces the requisite, and frequently used, Hilbert space formalism in a systematic manner. This will be useful to graduate or advanced undergraduate students seeking a self-contained introduction to the subject. Advanced researchers will find novel asymptotic arguments.

Author: Frédéric Ferraty
Publisher: Springer Science & Business Media
ISBN: 0387366202
Category : Mathematics
Languages : en
Pages : 260

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Book Description
Modern apparatuses allow us to collect samples of functional data, mainly curves but also images. On the other hand, nonparametric statistics produces useful tools for standard data exploration. This book links these two fields of modern statistics by explaining how functional data can be studied through parameter-free statistical ideas. At the same time it shows how functional data can be studied through parameter-free statistical ideas, and offers an original presentation of new nonparametric statistical methods for functional data analysis.

Author: Jorge Mateu
Publisher: John Wiley & Sons
ISBN: 1119387841
Category : Social Science
Languages : en
Pages : 452

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Book Description
Geostatistical Functional Data Analysis Explore the intersection between geostatistics and functional data analysis with this insightful new reference Geostatistical Functional Data Analysis presents a unified approach to modelling functional data when spatial and spatio-temporal correlations are present. The Editors link together the wide research areas of geostatistics and functional data analysis to provide the reader with a new area called geostatistical functional data analysis that will bring new insights and new open questions to researchers coming from both scientific fields. This book provides a complete and up-to-date account to deal with functional data that is spatially correlated, but also includes the most innovative developments in different open avenues in this field. Containing contributions from leading experts in the field, this practical guide provides readers with the necessary tools to employ and adapt classic statistical techniques to handle spatial regression. The book also includes: A thorough introduction to the spatial kriging methodology when working with functions A detailed exposition of more classical statistical techniques adapted to the functional case and extended to handle spatial correlations Practical discussions of ANOVA, regression, and clustering methods to explore spatial correlation in a collection of curves sampled in a region In-depth explorations of the similarities and differences between spatio-temporal data analysis and functional data analysis Aimed at mathematicians, statisticians, postgraduate students, and researchers involved in the analysis of functional and spatial data, Geostatistical Functional Data Analysis will also prove to be a powerful addition to the libraries of geoscientists, environmental scientists, and economists seeking insightful new knowledge and questions at the interface of geostatistics and functional data analysis.

Author: Christoph Molnar
Publisher: Lulu.com
ISBN: 0244768528
Category : Computers
Languages : en
Pages : 320

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Book Description
This book is about making machine learning models and their decisions interpretable. After exploring the concepts of interpretability, you will learn about simple, interpretable models such as decision trees, decision rules and linear regression. Later chapters focus on general model-agnostic methods for interpreting black box models like feature importance and accumulated local effects and explaining individual predictions with Shapley values and LIME. All interpretation methods are explained in depth and discussed critically. How do they work under the hood? What are their strengths and weaknesses? How can their outputs be interpreted? This book will enable you to select and correctly apply the interpretation method that is most suitable for your machine learning project.