Author: Peter Andreas SeeberPublisher:
ISBN:
Category :
Languages : en
Pages : 0
Book Description
Evaluation of Lake Sedimentary Ancient DNA Metabarcoding to Assess Fungal Biodiversity in Arctic Paleoecosystems
Author: Peter Andreas SeeberDNA Barcoding and Metabarcoding Approaches for the Assessment of Fungal Biodiversity Within Successional Coastal Habitats
Author: Liam GeorgeEnvironmental DNA
Author: Pierre TaberletPublisher: Oxford University Press
ISBN: 0191079995
Category : Science
Languages : en
Pages : 272
Book Description
Environmental DNA (eDNA) refers to DNA that can be extracted from environmental samples (such as soil, water, feces, or air) without the prior isolation of any target organism. The analysis of environmental DNA has the potential of providing high-throughput information on taxa and functional genes in a given environment, and is easily amenable to the study of both aquatic and terrestrial ecosystems. It can provide an understanding of past or present biological communities as well as their trophic relationships, and can thus offer useful insights into ecosystem functioning. There is now a rapidly-growing interest amongst biologists in applying analysis of environmental DNA to their own research. However, good practices and protocols dealing with environmental DNA are currently widely dispersed across numerous papers, with many of them presenting only preliminary results and using a diversity of methods. In this context, the principal objective of this practical handbook is to provide biologists (both students and researchers) with the scientific background necessary to assist with the understanding and implementation of best practices and analyses based on environmental DNA.
Introduction to WinBUGS for Ecologists
Author: Marc KéryPublisher: Academic Press
ISBN: 0123786061
Category : Science
Languages : en
Pages : 321
Book Description
Introduction to WinBUGS for Ecologists introduces applied Bayesian modeling to ecologists using the highly acclaimed, free WinBUGS software. It offers an understanding of statistical models as abstract representations of the various processes that give rise to a data set. Such an understanding is basic to the development of inference models tailored to specific sampling and ecological scenarios. The book begins by presenting the advantages of a Bayesian approach to statistics and introducing the WinBUGS software. It reviews the four most common statistical distributions: the normal, the uniform, the binomial, and the Poisson. It describes the two different kinds of analysis of variance (ANOVA): one-way and two- or multiway. It looks at the general linear model, or ANCOVA, in R and WinBUGS. It introduces generalized linear model (GLM), i.e., the extension of the normal linear model to allow error distributions other than the normal. The GLM is then extended contain additional sources of random variation to become a generalized linear mixed model (GLMM) for a Poisson example and for a binomial example. The final two chapters showcase two fairly novel and nonstandard versions of a GLMM. The first is the site-occupancy model for species distributions; the second is the binomial (or N-) mixture model for estimation and modeling of abundance. - Introduction to the essential theories of key models used by ecologists - Complete juxtaposition of classical analyses in R and Bayesian analysis of the same models in WinBUGS - Provides every detail of R and WinBUGS code required to conduct all analyses - Companion Web Appendix that contains all code contained in the book and additional material (including more code and solutions to exercises)
Ancient DNA
Author: Beth Alison ShapiroPublisher:
ISBN: 9781617795169
Category : Nature
Languages : en
Pages : 247
Book Description
Ancient DNA presents an overview of the many of the protocols commonly used to study ancient DNA. These include laboratory instructions, extraction protocols, laboratory techniques, and suggestions for appropriate analytical approaches to make sense of the sequences obtained.
Applications of Non-Pollen Palynomorphs
Author: F. MarretPublisher: Geological Society of London
ISBN: 1786205416
Category : Science
Languages : en
Pages : 358
Book Description
This long-awaited book about non-pollen palynomorphs (NPPs) aims to cover gaps in our knowledge of these abundant but understudied palynological remains. NPPs, such as fungal spores, testate amoebae, dinoflagellate cysts, acritarchs and animal remains, are routinely recovered from palynological preparations of marine or terrestrial material, from Proterozoic to recent geological times. This book gives the reader a comprehensive overview of the different types of NPPs, with examples from diverse time periods and environments. It provides guidance on sample preparation to maximize the recovery of these NPPs, detailed information on their diversity and ecological affinity, clarification on the nomenclature and demonstrates their value as environmental indicators. This volume will become the reference guide for any student, academic or practitioner interested in everything else in their palynological preparations.
Recombinant DNA Methodology
Author: Publisher: Academic Press
ISBN: 1483295974
Category : Science
Languages : en
Pages : 793
Book Description
Recombinant DNA methods are powerful, revolutionary techniques that allow the isolation of single genes in large amounts from a pool of thousands or millions of genes and the modification of these isolated genes or their regulatory regions for reintroduction into cells for expression at the RNA or protein levels. These attributes lead to the solution of complex biological problems and the production of new and better products in the areas of medicine, agriculture, and industry. Recombinant DNA Methodology, a volume in the Selected Methods in Enzymology series produced in benchtop format, contains a selection of key articles from Volumes 68, 100, 101, 153, 154, and 155 of Methods in Enzymology. The essential and widely used procedures provided at an affordable price will be an invaluable aid to the graduate student and the researcher. - Enzymes in DNA research - DNA isolation, hybridization, and cloning - DNA sequence analysis - cDNA cloning - Gene products - Identification of cloned genes and mapping of genes - Monitoring cloned gene expression - Cloning and transferring of genes into yeast cells - Cloning and transferring of genes into plant cells - Cloning and transferring of genes into animal cells - Site-directed mutagenesis - Protein engineering - Expression vectors
The Interpretation of Ecological Data
Author: E. C. PielouPublisher: John Wiley & Sons
ISBN: 9780471889502
Category : Science
Languages : en
Pages : 278
Book Description
A detailed introduction to the methods used by ecologists--classification and ordination--to clarify and interpret large, unwieldy masses of multivariate field data. Permits ecologists to understand, not just mechanically use, pre-packaged programs for multivariate analysis. Demonstrates these techniques using artificial data simple enough for every analytical step to be understood.
Paleogenomics
Author: Charlotte LindqvistPublisher: Springer
ISBN: 3030047539
Category : Science
Languages : en
Pages : 432
Book Description
Advances in genome-scale DNA sequencing technologies have revolutionized genetic research on ancient organisms, extinct species, and past environments. When it is recoverable after hundreds or thousands of years of unintended preservation, “ancient DNA” (or aDNA) is often highly degraded, necessitating specialized handling and analytical approaches. Paleogenomics defines the field of reconstructing and analyzing the genomes of historic or long-dead organisms, most often through comparison with modern representatives of the same or similar species. The opportunity to isolate and study paleogenomes has radically transformed many fields, spanning biology, anthropology, agriculture, and medicine. Examples include understanding evolutionary relationships of extinct species known only from fossils, the domestication of plants and animals, and the evolution and geographical spread of certain pathogens. This pioneering book presents a snapshot view of the history, current status, and future prospects of paleogenomics, taking a broad viewpoint that covers a range of topics and organisms to provide an up-to-date status of the applications, challenges, and promise of the field. This book is intended for a variety of readerships, including upper-level undergraduate and graduate students, professionals and experts in the field, as well as anyone excited by the extraordinary insights that paleogenomics offers.
Zoological Collections of Germany
Author: Lothar A. BeckPublisher: Springer
ISBN: 3319443216
Category : Science
Languages : en
Pages : 730
Book Description
This book is devoted to the knowledge of up to 250 years of collecting, organizing and preserving animals by generations of scientists. Zoological Collections are a huge resource for modern animal research and should be available for national and international scientists and institutions, as well as prospective public and private customers. Moreover, these collections are an important part of the scientific enterprise, supporting scientific research, human health, public education, and the conservation of biodiversity. Much of what we are beginning to understand about our world, we owe to the collection, preservation, and ongoing study of natural specimens. Properly preserved collections of marine or terrestrial animals are libraries of Earth's history and vital to our ability to learn about our place in its future. The approach employed by the editor involves not only an introduction to the topic, but also an external view on German collections including an assessment of their value in the international and national context, and information on the international and national collection networks. Particular attention is given to new approaches of sorting, preserving and researching in Zoological Collections as well as their neglect and/or threat. In addition, the book provides information on all big Public Research Museums, on important Collections in regional Country and local District Museums, and also on University collections. This is a highly informative and carefully presented book, providing scientific insight for readers with an interest in biodiversity, taxonomy, or evolution, as well as natural history collections at large.