Author: Victoria L. Pritchard Publisher: ISBN: Category : Cutthroat trout Languages : en Pages : 19
Book Description
Introgressive hybridization, mediated by anthropogenic activity, poses a threat to numerous and diverse taxa. The management of introgressed individuals or populations within species of conservation concern is currently the subject of scientific and political debate. We investigate the utility of 10 non-diagnostic microsatellite loci for investigating admixture from introduced Yellowstone cutthroat trout (Oncorhynchus clarkii bouvieri) and rainbow trout (O. mykiss) within 25 putative Rio Grande cutthroat trout (O. c. virginalis) populations. We apply five different approaches (correspondence analysis, maximum-likelihood assignment tests, an admixture estimator based on allele frequencies, an admixture estimator based on coalescent theory and an admixture estimator implementing a Bayesian method) and use two alternative O. c. virginalis reference samples. All approaches were capable of identifying one population that consisted entirely of introduced O. c. bouvieri, and three out of five approaches enabled us to discriminate those populations with relatively high levels of non-native introgression from those populations with little or none. Actual estimates of admixture coefficients within a test population, varied, however, with the approach and reference sample used. These results have important implications for policies dividing populations into different management categories according to the estimated proportion of non-native genetic material that they contain.
Author: Matthew R. Campbell Publisher: ISBN: Category : Cutthroat trout Languages : en Pages : 12
Book Description
Since the mid-1920s, the Idaho Department of Fish and Game has cultured Yellowstone cutthroat trout Oncorhynchus clarki bouvieri at Henrys Lake to offset declines in natural production and for use in stocking programs throughout Idaho. Since the mid-1970s, they have also produced F1 hybrids: female Yellowstone cutthroat trout * male rainbow trout O. mykiss. The ability of fishery managers, when selecting broodstock, to visually distinguish returning cutthroat trout from F1 hybrids is, therefore, crucial to avoid accidental introduction of rainbow trout genes into the hatchery-supplemented cutthroat trout population. To evaluate this ability, fish identified by staff as putative cutthroat trout or hybrids (an array of phenotypic characters are used), were sampled during two spawning seasons. Phenotypically identified fish were genetically tested using species-specific restriction fragment length polymorphisms (RFLPs) of nuclear and mitochondrial DNA gene loci and diagnostic allozyme loci. Current levels of rainbow trout introgression in the cutthroat trout population at Henrys Lake were also investigated by analyzing samples collected from the lake and several of its tributaries. Results indicated that staff's phenotypic identifications were highly accurate in distinguishing cutthroat trout from F1 hybrids when selecting broodstock (no F1 hybrids were detected among 80 samples identified as pure). However, backcrosses of F1 hybrids were identified in random collections of adults from the lake as well as fry from Henrys Lake tributaries, indicating introgression. Present levels of rainbow trout introgression are most likely the product of past rainbow trout introductions and limited, intermittent spawning of hatchery-produced F1 hybrids with wild Yellowstone cutthroat, rather than the accidental crossing of F1 hybrids with cutthroat trout at the hatchery. Current levels of introgression are inadvertently maintained by (1) the inability of managers to phenotypically identify and exclude as broodstock individuals with low levels of rainbow trout introgression and (2) the limited, intermittent reproductive success of straying, hatchery-produced F1 hybrids.--Abstract.
Author: Clint Cain Muhlfeld Publisher: ISBN: Category : Animal ecology Languages : en Pages : 264
Book Description
Anthropogenic hybridization is one of the greatest threats to global biodiversity. Hybridization and introgression may lead to a loss of locally adapted gene complexes and ecological adaptations in native populations, yet these potential consequences have not been fully evaluated in nature. I investigated factors influencing the spread of hybridization between native westslope cutthroat trout (Oncorhynchus clarkii lewisi) and nonnative rainbow trout (O. mykiss) in the upper Flathead River system, Montana (USA) and British Columbia (Canada). The fundamental questions of my dissertation were: what are the behavioral, ecological, and fitness consequences of hybridization and what factors influence successful invasion of hybrids? First, I assessed the patterns of spawning between parental species and their hybrids and found that hybridization alters the spawning behavior of migratory westslope cutthroat trout, and is spreading via long distance dispersal of hybrids from downstream sources and some temporal overlap during spawning. Second, I describe for the first time how a wide range of levels of nonnative admixture affect fitness of cutthroat trout in the wild by estimating reproductive success in a recently invaded stream using parentage analysis with multilocus microsatellite markers. Small amounts of hybridization markedly reduced reproductive success, with fitness exponentially declining by ~50% with 20% nonnative genetic admixture. Finally, I evaluated the association of local-habitat features, landscape characteristics, and biotic factors with the spread of hybridization in the system, and found that hybridization increases in streams with warmer water temperatures, high land use disturbance and close proximity to the source of hybridization; however, none of these factors appeared sufficient to prevent further spread. These combined results suggest that hybrids are not only genetically different than westslope cutthroat trout but also have reduced fitness and are ecologically different, and that hybridization is likely to continue to spread if hybrid populations with high amounts of rainbow trout admixture are not reduced or eliminated. I conclude that extant aboriginal cutthroat trout are at greater conservation risk due to hybridization than previously thought and policies that protect hybridized populations need reconsideration.
Author: Matthew Corsi Publisher: ISBN: Category : Cutthroat trout Languages : en Pages :
Book Description
The role of introductions of nonnative fishes in the decline of native fishes cannot be overstated. Westslope cutthroat trout (Oncorhynchus clarkii lewisi, WCT) are a salmonid native to the northern Rocky Mountains. These trout hybridize with rainbow trout (O. mykiss, RBT) where they are sympatric; however, in portions of the WCT range where RBT have been introduced, hybridization appears to spread rapidly and threatens continued existence of WCT. The conservation value of these hybridized populations is equivocal, and a better knowledge of the ecological, demographic, behavioral, and genetic consequences of hybridization is needed to better inform conservation strategies. I investigated three related questions: specifically, what landscape factors are associated with estimates of introgression; what are life history differences between WCT and hybrids; and what are tradeoffs in restoring migratory life history in populations threatened by hybridization? The riverscape context plays a substantial role in the distribution of hybrids, as estimates of introgression declined with increases in stream slope, elevation, and distance from a primary source of RBT, three correlated landscape variables. Spatial variation in patterns of hybridization suggests clarifying objectives for sampling and careful designs are necessary to adequately understand the status of populations. Variation in location may relate to some of the ecological differences, such as growth, among fish with different levels of introgression. In the Jocko River, hybrids with ancestry> 20% RBT demonstrated higher growth, earlier migration, increased egg size, and lower fecundity versus WCT. These lines of evidence demonstrate the importance of limiting further hybridization even in populations that already have low levels of hybridization. Given that many unaltered populations currently reside in isolated habitat fragments, I evaluated several demographic tradeoffs of restoring a migratory life history weighed against the risks of increased potential for hybridization from removing barriers or selectively passing migratory fish above the barriers using both matrix and genetic population models. Restoration of migratory life history substantially increases population viability; however, hybridization in above-barrier population increases predictably relative to hybridization status of below-barrier population, which may reduce viability if vital rates are reduced in hybrids. Hybridization creates a challenging set of management problems, but this research adds several important pieces to the puzzles to help develop and evaluate conservation strategies.
Author: Kitty E. Griswold Publisher: ISBN: Category : Cutthroat trout Languages : en Pages : 288
Book Description
Genetic diversity of two salmonid species, Dolly Varden (Salvelinus malma) and coastal cutthroat trout (Oncorhynchus clarki clarki) in Prince William Sound, Alaska were examined at multiple spatial scales with three molecular markers. Pleistocene glaciers covered what is now Prince William Sound 8,000-12,000 years ago and both species colonized the region subsequently. Because these species have different migratory behavior and historic ranges I expected to see different patterns of genetic diversity within Prince William Sound. Haplotype frequency and nucleotide diversity in sixteen mitochondrial DNA (mtDNA) restriction fragment enzymes combinations in Prince William Sound were higher in Dolly Varden than in coastal cutthroat trout, which were close to fixation. Low estimates of these measures in coastal cutthroat trout may reflect a founder effect resulting from colonization of this region from a single glacial refuge (Cascadia) and low dispersal capacity. To examine if genetic diversity in coastal cutthroat trout was higher in areas of glacial refuge, three additional locations from throughout their distributional range were examined with the same restriction enzymes. Haplotype frequency and nucleotide diversity were lower in areas that were glaciated than estimates of the same measures in a glacial refuge. Again, founder effects during colonization of the three glaciated sites may account for these results. Genetic variation of Dolly Varden and coastal cutthroat trout was also examined within and among populations in Prince William Sound with microsatellites and allozymes. The pattern of genetic variation in coastal cutthroat trout was complex. There was lower genetic diversity within populations that were recently colonized following recent de-glaciation (150-350 ybp). Genetic diversity among some coastal cutthroat trout populations was high, which possibly reflects restricted migration. In other trout populations there was low diversity among populations, possible reflecting historic gene flow. In Dolly Varden, genetic variation among anadromous populations in Prince William Sound was low. There were large differences among resident and anadromous populations. These data provide information for the management for both species, which may reduce the risk of the loss of genetic diversity within local populations.
Author: Carl O. Ostberg Publisher: ISBN: Category : Languages : en Pages : 157
Book Description
Introgressive hybridization creates novel gene combinations that may generate important evolutionary novelty and thus contribute to biological complexity and diversification. On the other hand, hybridization with introduced species can threaten native species, such as cutthroat trout (Oncorhynchus clarkii) following the introduction of rainbow trout (O. mykiss). While rainbow trout introgression in cutthroat trout is well documented, neither the evolutionary consequences nor conservation implications are well understood. Hybridization between rainbow and cutthroat trout occurs in the context of substantial chromosomal rearrangement, as well incompletely re-diploidized genomes. Rainbow and cutthroat trout are descended from an autopolyploid ancestor, and extensive chromosome arm rearrangements have occurred between the species following their divergence from the last common ancestor. Evidence for incomplete re-diploidization includes the occasional formation of multivalents and duplicated loci occasionally exhibit a mixture of disomic and tetrasomic inheritance. Thus, transmission genetics may be complicated by recombination between homeologs. Here, I evaluated the phenotypic and genetic consequences of introgression between rainbow trout and Yellowstone cutthroat trout (O. clarkii bouvieri) to provide insights into genome processes that may help explain how introgression affects hybrid genome evolution. The overall aim of the first part of this dissertation (Chapters 1 and 2) was to evaluate phenotypic variation and gene expression among parental species and hybrids to gain insight into the genetic basis of hybrid and parental morphologies. We constructed seven line crosses: both parental species, both reciprocal F1 hybrids, first-generation backcrosses, and F2 hybrids. In Chapter 1, we aimed to assess the role of introgression on growth (length and weight gain), morphology, and developmental instability among these seven crosses. Growth was related to the proportion of rainbow trout genome contained within crosses. Rainbow and cutthroat trout were morphologically divergent: rainbow trout were generally robust whereas cutthroat trout were typically more slender and their hybrids tended to be morphologically intermediate, although backcrosses were morphologically more similar to their backcrossing parental species. These differences in growth and body morphology may be maintained, in part, through the regulation of muscle growth-related genes. Therefore, in Chapter 2, we aimed to characterize the expression of muscle growth-related genes and to describe relationships between gene expression and growth patterns among parental species and hybrids to gain insight into the underlying genetic basis of the difference in their body shapes. Our findings suggest that rainbow and cutthroat trout exhibit differences in muscle growth regulation, that transcriptional networks may be modified by hybridization, and that hybridization disrupts intrinsic relationships between gene expression and growth patterns that may be functionally important for phenotypic adaptations. The overall aim of the second part of this dissertation (Chapters 3 and 4) was to assess the genetic consequences of introgression to determine how the genomic architecture of hybrids affects allelic inheritance, and thus their subsequent evolution. In Chapter 3, we generated a genetic linkage map for rainbow-Yellowstone cutthroat trout hybrids to evaluate genome process that may influence introgression genome evolution in hybrid populations. Our results suggest that few genomic incompatibilities exist between rainbow and cutthroat trout, allowing their to genomes introgress freely, with the exception that differences in chromosome arrangement between the species may act as barriers to introgression and enable large portions of non-recombined chromosomes to persist within admixed populations. In Chapter 4, we aimed to determine the effect of incomplete re-diploidization on transmission genetics in hybrids, compared to pure species. We used the parental gametic phase from existing genetic linkage maps to identify the homeologs that recombine, to characterize this recombination, and to verify meiotic models of residual tetrasomic inheritance in autotetraploids. Recombination between homeologs occurred frequently in hybrids and results in the non-random segregation of alleles across extended chromosomal regions as well as extensive double-reduction in hybrid parental gametes. Taken together, the results from Chapters 3 and 4 suggested that chromosome rearrangements and recombination of homeologs could influence genome evolution in admixed populations. The research presented in this dissertation indicated that the evolutionary fate of hybrid genomes is unpredictable. Some of our findings suggest that introgressions proceeds in a predictable fashion in admixed populations; rainbow and cutthroat genomes freely introgress, with the exception that chromosome rearrangements may suppress recombination across large chromosomal regions. However, homeologous recombination during meiosis in hybrids results in unpredictable segregation of chromosomes, and the segregation of these chromosomes may depend on the hybrid generation of each parent within an admixed population. Furthermore, phenotype and gene expression are quantitative traits, and expression of these traits may depend on hybrid genotypes across transcriptional networks that are controlled by genes distributed over the entire genome. Consequently, hybridization may alter transcriptional regulation of genes, resulting in unpredictable gene expression patterns, which, in turn, contribute to the high phenotypic variation in hybrids.
Author: Matthew C. Boyer Publisher: ISBN: Category : Cutthroat trout Languages : en Pages : 12
Book Description
We analyzed 13 microsatellite loci to estimate gene flow among westslope cutthroat trout, Oncorhynchus clarkii lewisi, populations and determine the invasion pattern of hybrids between native O. c. lewisi and introduced rainbow trout, Oncorhynchus mykiss, in streams of the upper Flathead River system, Montana (USA) and British Columbia (Canada). Fourteen of 31 sites lacked evidence of O. mykiss introgression, and gene flow among these nonhybridized O. c. lewisi populations was low, as indicated by significant allele frequency divergence among populations (?ST = 0.076, ?ST = 0.094, P
Author: Victoria L. Pritchard
Author: Matthew R. Campbell
Author: 
Author: Clint Cain Muhlfeld
Author: Matthew Corsi
Author: Kitty E. Griswold
Author: Molly Rebecca Stephens
Author: 
Author: Carl O. Ostberg
Author: Matthew C. Boyer