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Design, Synthesis, Pericyclic Chemistry and Biomedical Applications of Azopeptides

Design, Synthesis, Pericyclic Chemistry and Biomedical Applications of Azopeptides PDF Author: Ramesh Chingle
Publisher:
ISBN:
Category :
Languages : en
Pages :

Book Description
The azapeptides are peptide mimics in which the alpha carbon of one or more amino acids has been replaced with a nitrogen atom. The primary goal of this doctorate study was to develop a new method for the synthesis of azapeptides by the application of azopeptides, which are azodicarbonyl analogs that possess an imino urea component. Oxidation of aza-glycine residues proved effective for making azopeptides, which were employed in pericyclic chemistry and examined by X-ray crystallography. Diels−Alder cyclization and Alder−ene reactions on azopeptides enabled respectively access to constrained aza-pipecolyl and azaallylglycinyl residues. X-ray analysis of an azopeptide in the solid state provided insight into imino urea configuration (Chapter 2). Employing the products from azopeptide chemistry as constrained valine analogs, mimics of the Ala-Val-Pro-Ile sequence from the second mitochondria derived activator of caspases (Smac) protein were synthesized and demonstrated ability to induce apoptosis in breast cancer cells (Chapter 3). Following the development of a method to synthesize azopeptides in solution, a solidphase approach was conceived to prepare azopeptides on Rink amide resin and may be amenable to combinatorial chemistry for library generation. This study was targeted on the synthesis of aza-analogs of the opioid peptides morphiceptin and endomorphins as well as the Cluster of Differentiation 36 receptor (CD36) ligand Growth Hormone Releasing Peptide-6 (GHRP-6, His-D-Trp-Ala-Trp-D-Phe-Lys-NH2). The former were examined due to their importance as opioid receptor subtype selective agonists with potential for developing novel analgesics. The latter was targeted in pursuit of selective CD36 modulators with therapeutic potential for treating diseases featuring macrophage-driven inflammation including age-related macular degeneration and atherosclerosis. Twelve aza-opioids were synthesized by replacing proline at the two position of the respective peptide ligands with different aza-pipecolate residues. Similarly, five aza-pipecolyl GHRP-6 analogs were synthesized using the solid-phase method to replace respectively the Ala3 and Trp4 residues (Chapter 4). Examination of the aza-opioids for inhibitory potency on electrically induced contractions of the guinea pig ileum and mouse vas deferens, and the aza-GHRP-6 analogs for capacity to diminish CD36-mediated overproduction of nitric oxide in macrophage cells iv after treatment with the Toll-like receptor-2-agonist fibroblast-stimulating lipopeptide, both demonstrated the utility of the aza-pipecolate methodology for studying the influence of conformation on peptide activity and selectivity. The novel methods for the synthesis of azopeptides in solution and on solid support described in this thesis are designed to enable their use in studies of structure-activity relationships with different biologically active peptides. In this respect, azopeptides have been applied in this research to make ligands of the melanocyte-inhibiting factor-1 (MIF-1), Smac, opioid and CD36 receptors. Considering the effectiveness of the synthetic methods and the potential applications of azopeptides, the findings of this thesis offer strong potential for the advancement of peptide science in the context of medicinal chemistry and chemical biology.

Design, Synthesis, Pericyclic Chemistry and Biomedical Applications of Azopeptides

Design, Synthesis, Pericyclic Chemistry and Biomedical Applications of Azopeptides PDF Author: Ramesh Chingle
Publisher:
ISBN:
Category :
Languages : en
Pages :

Book Description
The azapeptides are peptide mimics in which the alpha carbon of one or more amino acids has been replaced with a nitrogen atom. The primary goal of this doctorate study was to develop a new method for the synthesis of azapeptides by the application of azopeptides, which are azodicarbonyl analogs that possess an imino urea component. Oxidation of aza-glycine residues proved effective for making azopeptides, which were employed in pericyclic chemistry and examined by X-ray crystallography. Diels−Alder cyclization and Alder−ene reactions on azopeptides enabled respectively access to constrained aza-pipecolyl and azaallylglycinyl residues. X-ray analysis of an azopeptide in the solid state provided insight into imino urea configuration (Chapter 2). Employing the products from azopeptide chemistry as constrained valine analogs, mimics of the Ala-Val-Pro-Ile sequence from the second mitochondria derived activator of caspases (Smac) protein were synthesized and demonstrated ability to induce apoptosis in breast cancer cells (Chapter 3). Following the development of a method to synthesize azopeptides in solution, a solidphase approach was conceived to prepare azopeptides on Rink amide resin and may be amenable to combinatorial chemistry for library generation. This study was targeted on the synthesis of aza-analogs of the opioid peptides morphiceptin and endomorphins as well as the Cluster of Differentiation 36 receptor (CD36) ligand Growth Hormone Releasing Peptide-6 (GHRP-6, His-D-Trp-Ala-Trp-D-Phe-Lys-NH2). The former were examined due to their importance as opioid receptor subtype selective agonists with potential for developing novel analgesics. The latter was targeted in pursuit of selective CD36 modulators with therapeutic potential for treating diseases featuring macrophage-driven inflammation including age-related macular degeneration and atherosclerosis. Twelve aza-opioids were synthesized by replacing proline at the two position of the respective peptide ligands with different aza-pipecolate residues. Similarly, five aza-pipecolyl GHRP-6 analogs were synthesized using the solid-phase method to replace respectively the Ala3 and Trp4 residues (Chapter 4). Examination of the aza-opioids for inhibitory potency on electrically induced contractions of the guinea pig ileum and mouse vas deferens, and the aza-GHRP-6 analogs for capacity to diminish CD36-mediated overproduction of nitric oxide in macrophage cells iv after treatment with the Toll-like receptor-2-agonist fibroblast-stimulating lipopeptide, both demonstrated the utility of the aza-pipecolate methodology for studying the influence of conformation on peptide activity and selectivity. The novel methods for the synthesis of azopeptides in solution and on solid support described in this thesis are designed to enable their use in studies of structure-activity relationships with different biologically active peptides. In this respect, azopeptides have been applied in this research to make ligands of the melanocyte-inhibiting factor-1 (MIF-1), Smac, opioid and CD36 receptors. Considering the effectiveness of the synthetic methods and the potential applications of azopeptides, the findings of this thesis offer strong potential for the advancement of peptide science in the context of medicinal chemistry and chemical biology.

Design, Synthesis and Biomedical Applications of Azabicycloalkanone Amino Acid Peptidomimetics

Design, Synthesis and Biomedical Applications of Azabicycloalkanone Amino Acid Peptidomimetics PDF Author: Nagavenkata Atmuri
Publisher:
ISBN:
Category :
Languages : en
Pages :

Book Description


Protein Structure and Modeling

Protein Structure and Modeling PDF Author: Natalya Kurochkina
Publisher: Springer
ISBN: 9811366012
Category : Science
Languages : en
Pages : 276

Book Description
This book will consider principles of the organization of protein molecules, the relationships between primary, secondary, and tertiary structure, the determinants of protein conformation, and the applications of structure determination and structure modeling in biomedical research.

Modern Applications of Cycloaddition Chemistry

Modern Applications of Cycloaddition Chemistry PDF Author: Paolo Quadrelli
Publisher: Elsevier
ISBN: 0128152745
Category : Science
Languages : en
Pages : 354

Book Description
Modern Applications of Cycloaddition Chemistry examines this area of organic chemistry, with special attention paid to cycloadditions in synthetic and mechanistic applications in modern organic chemistry. While many books dedicated to cycloaddition reactions deal with the synthesis of heterocycles, general applications, specific applications in natural product synthesis, and the use of a class of organic compounds, this work sheds new light on pericyclic reactions by demonstrating how these valuable tools elegantly solve synthetic and mechanistic problems. The work examines how pericyclic reactions have been extensively applied to different chemistry areas, such as chemical biology, biological processes, catalyzed cycloaddition reactions, and more. This work will be useful for organic chemists who deal with organic chemistry, medicinal chemistry, agrochemistry and material chemistry. - Provides details on the synthesis of antiviral and anticancer compounds, marking the key role of unconventional catalyzed cycloaddition reactions for preparing new derivatives in a unique reaction pathway that is scalable in industrial processes - Contains the most up-to-date review of the use of pericyclic reactions in drug delivery - Includes the enzyme-catalyzed processes involving cycloaddition reactions for different targets, demonstrating that cycloaddition is more common in nature than expected - Features new applications for cycloadditions in material chemistry and provides a general view of the most recent results in the area

Peptidomimetics I

Peptidomimetics I PDF Author: William D. Lubell
Publisher: Springer
ISBN: 3319491199
Category : Science
Languages : en
Pages : 322

Book Description
The series Topics in Heterocyclic Chemistry presents critical reviews on present and future trends in the research of heterocyclic compounds. Overall the scope is to cover topics dealing with all areas within heterocyclic chemistry, both experimental and theoretical, of interest to the general heterocyclic chemistry community. The series consists of topic related volumes edited by renowned editors with contributions of experts in the field. All chapters from Topics in Heterocyclic Chemistry are published Online First with an individual DOI. In references, Topics in Heterocyclic Chemistry is abbreviated as Top Heterocycl Chem and cited as a journal.

Peptide-based Drug Discovery

Peptide-based Drug Discovery PDF Author: Ved Srivastava
Publisher: Royal Society of Chemistry
ISBN: 1782627324
Category : Medical
Languages : en
Pages : 589

Book Description
With potentially high specificity and low toxicity, biologicals offer promising alternatives to small-molecule drugs. Peptide therapeutics have again become the focus of innovative drug development efforts backed up by a resurgence of venture funds and small biotechnology companies. What does it take to develop a peptide-based medicine? What are the key challenges and how are they overcome? What are emerging therapeutics for peptide modalities? This book answers these questions with a holistic story from molecules to medicine, combining the themes of design, synthesis and clinical applications of peptide-based therapeutics and biomarkers. Chapters are written and edited by leaders in the field from industry and academia and they cover the pharmacokinetics of peptide therapeutics, attributes necessary for commercially successful metabolic peptides, medicinal chemistry strategies for the design of peptidase-resistant peptide analogues, disease classes for which peptide therapeutic are most relevant, and regulatory issues and guidelines. The critical themes covered provide essential background information on what it takes to develop peptide-based medicine from a chemistry perspective and views on the future of peptide drugs. This book will be a valuable resource not only as a reference book for the researcher engaged in academic and pharmaceutical setting, from basic research to manufacturing and from organic chemistry to biotechnology, but also a valuable resource to graduate students to understand discovery and development process for peptide-based medicine.

Peptide-Based Materials

Peptide-Based Materials PDF Author: Timothy Deming
Publisher: Springer Science & Business Media
ISBN: 3642271391
Category : Technology & Engineering
Languages : en
Pages : 184

Book Description
Synthesis of Polypeptides by Ring-Opening Polymerization of α-Amino Acid N-Carboxyanhydrides, by Jianjun Cheng and Timothy J. Deming.- Peptide Synthesis and Self-Assembly, by S. Maude, L. R. Tai, R. P. W. Davies, B. Liu, S. A. Harris, P. J. Kocienski and A. Aggeli.- Elastomeric Polypeptides, by Mark B. van Eldijk, Christopher L. McGann, Kristi L. Kiick andJan C. M. van Hest.- Self-Assembled Polypeptide and Polypeptide Hybrid Vesicles: From Synthesis to Application, by Uh-Joo Choe, Victor Z. Sun, James-Kevin Y. Tan and Daniel T. Kamei.- Peptide-Based and Polypeptide-Based Hydrogels for Drug Delivery and Tissue Engineering, by Aysegul Altunbas and Darrin J. Pochan.-

Peptides 2015

Peptides 2015 PDF Author: Ved Srivastava
Publisher:
ISBN: 9780983974154
Category :
Languages : en
Pages : 330

Book Description
Proceedings of the 24th American Peptide Symposium in Orlando, Florida, June, 2015

Evaluation of Enzyme Inhibitors in Drug Discovery

Evaluation of Enzyme Inhibitors in Drug Discovery PDF Author: Robert A. Copeland
Publisher: John Wiley & Sons
ISBN: 0471723266
Category : Science
Languages : en
Pages : 295

Book Description
Vital information for discovering and optimizing new drugs "Understanding the data and the experimental details that support it has always been at the heart of good science and the assumption challenging process that leads from good science to drug discovery. This book helps medicinal chemists and pharmacologists to do exactly that in the realm of enzyme inhibitors." -Paul S. Anderson, PhD This publication provides readers with a thorough understanding of enzyme-inhibitor evaluation to assist them in their efforts to discover and optimize novel drug therapies. Key topics such as competitive, noncompetitive, and uncompetitive inhibition, slow binding, tight binding, and the use of Hill coefficients to study reaction stoichiometry are all presented. Examples of key concepts are presented with an emphasis on clinical relevance and practical applications. Targeted to medicinal chemists and pharmacologists, Evaluation of Enzyme Inhibitors in Drug Discovery focuses on the questions that they need to address: * What opportunities for inhibitor interactions with enzyme targets arise from consideration of the catalytic reaction mechanism? * How are inhibitors evaluated for potency, selectivity, and mode of action? * What are the advantages and disadvantages of specific inhibition modalities with respect to efficacy in vivo? * What information do medicinal chemists and pharmacologists need from their biochemistry and enzymology colleagues to effectively pursue lead optimization? Beginning with a discussion of the advantages of enzymes as targets for drug discovery, the publication then explores the reaction mechanisms of enzyme catalysis and the types of interactions that can occur between enzymes and inhibitory molecules that lend themselves to therapeutic use. Next are discussions of mechanistic issues that must be considered when designing enzyme assays for compound library screening and for lead optimization efforts. Finally, the publication delves into special forms of inhibition that are commonly encountered in drug discovery efforts, but can be easily overlooked or misinterpreted. This publication is designed to provide students with a solid foundation in enzymology and its role in drug discovery. Medicinal chemists and pharmacologists can refer to individual chapters as specific issues arise during the course of their ongoing drug discovery efforts.

Peptide and Protein Engineering

Peptide and Protein Engineering PDF Author: Olga Iranzo
Publisher: Humana
ISBN: 9781071607220
Category : Science
Languages : en
Pages : 289

Book Description
This thorough book aims to present the methods that have enabled the success of peptides and proteins in a wide variety of applications. It opens with a section on chemical tools applied to the production or engineering of peptides and proteins, and concludes with a collection of chapters on biological approaches used to engineer structure and function in peptides and proteins. As a book in the Springer Protocols Handbooks series, chapters include the kind of detailed descriptions and tips necessary for successful results in practice. Authoritative and practical, Peptide and Protein Engineering: From Concepts to Biotechnological Applications will be of great use to scientists in academia and industry seeking a better understanding of the emerging principles and methodologies in peptide and protein engineering.