Decoupling the Heterogeneity of Sediment Microbial Communities Along the Urbanization Gradients PDF Download
Are you looking for read ebook online? Search for your book and save it on your Kindle device, PC, phones or tablets. Download Decoupling the Heterogeneity of Sediment Microbial Communities Along the Urbanization Gradients PDF full book. Access full book title Decoupling the Heterogeneity of Sediment Microbial Communities Along the Urbanization Gradients by Jie Liang. Download full books in PDF and EPUB format.
Author: Jie Liang Publisher: ISBN: Category : Languages : en Pages : 0
Book Description
Comprehending the response of microbial communities in rivers along urbanization gradients to hydrologic characteristics and pollution sources is critical for effective watershed management. However, the effects of complex factors on riverine microbial communities remain poorly understood. Thus, we established a bacteria-based index of biotic integrity (Ba-IBI) to evaluate the microbial community heterogeneity of rivers along an urbanization gradient. To examine the response of Ba-IBI to multiple stressors, we employed a Bayesian network based on structural equation modeling (SEM-BN) and revealed the key control factors influencing Ba-IBI at different levels of urbanization. The findings indicated that nutrients in water exerted the most significant direct impact on Ba-IBI (r = -0.563), with nitrogen loading, particularly ammonia nitrogen, emerging as the primary direct driver of microbial community heterogeneity in the Liuyang River basin. In addition, our study confirmed the substantial adverse effects of urbanization on river ecology, as urban land use had the greatest indirect effect on Ba-IBI (r = -0.460). Specifically, the discharge load from wastewater treatment plants (WWTP) was found to have a significant negative impact on the Ba-IBI of the entire watershed. In the low urbanized watersheds, rice cultivation (RC) and concentrated animal feeding operations (CAFO) are key control factors, and an increase in their emissions can lead to a sharp decrease in Ba-IBI. In moderately urbanized watersheds, the Ba-IBI tended to decrease as the level of RC emissions increased, while in those with moderate RC emissions, an increase in point source emissions mitigated the negative impact of RC on Ba-IBI. In highly urbanized watersheds, Ba-IBI was not sensitive to changes in stressors. Overall, our study presents a novel approach by integrating Ba-IBI with multi-scenario analysis tools to assess the effects of multiple stressors on microbial communities in river sediments, providing valuable insights for more refined environmental decision-making.
Author: Jie Liang Publisher: ISBN: Category : Languages : en Pages : 0
Book Description
Comprehending the response of microbial communities in rivers along urbanization gradients to hydrologic characteristics and pollution sources is critical for effective watershed management. However, the effects of complex factors on riverine microbial communities remain poorly understood. Thus, we established a bacteria-based index of biotic integrity (Ba-IBI) to evaluate the microbial community heterogeneity of rivers along an urbanization gradient. To examine the response of Ba-IBI to multiple stressors, we employed a Bayesian network based on structural equation modeling (SEM-BN) and revealed the key control factors influencing Ba-IBI at different levels of urbanization. The findings indicated that nutrients in water exerted the most significant direct impact on Ba-IBI (r = -0.563), with nitrogen loading, particularly ammonia nitrogen, emerging as the primary direct driver of microbial community heterogeneity in the Liuyang River basin. In addition, our study confirmed the substantial adverse effects of urbanization on river ecology, as urban land use had the greatest indirect effect on Ba-IBI (r = -0.460). Specifically, the discharge load from wastewater treatment plants (WWTP) was found to have a significant negative impact on the Ba-IBI of the entire watershed. In the low urbanized watersheds, rice cultivation (RC) and concentrated animal feeding operations (CAFO) are key control factors, and an increase in their emissions can lead to a sharp decrease in Ba-IBI. In moderately urbanized watersheds, the Ba-IBI tended to decrease as the level of RC emissions increased, while in those with moderate RC emissions, an increase in point source emissions mitigated the negative impact of RC on Ba-IBI. In highly urbanized watersheds, Ba-IBI was not sensitive to changes in stressors. Overall, our study presents a novel approach by integrating Ba-IBI with multi-scenario analysis tools to assess the effects of multiple stressors on microbial communities in river sediments, providing valuable insights for more refined environmental decision-making.
Author: Shane Elliott Perryman Publisher: ISBN: Category : Denitrification Languages : en Pages : 482
Book Description
"Texture" was an important variable at the micro scale that described the community structure. However, texture was correlated with other factors at multiple scales and these correlations are discussed in the context of the gradient of urban influences. The amount of community variance explained by this set of correlated variables was less than 20% indicating that other factors were also important. The effect of sediment carbon composition was explored using multivariate decomposition of spectra recorded using Fourier Transform Infra Red (FT-IR) and Excitation Emission Matrices (EEM). Principal Components Analysis reduced the number of variables from these spectra to a few factors. Using the scores from the reduced factors demonstrated that carbon composition of the sediments also had a significant structuring effect on the denitrifying community. Links between the denitrifying community struture and function were explored in a multiway ANOVA manipulation of sediments collected from streams heavily impacted and lightly impacted by urbanization. Sediments were dosed with carbon substrates thought to mimic either an urban or non urban source, and changes in the response of CO2, CH4 and N2 monitored for one month. Additionally, sediments were treated with the heavy metal zinc, found in higher concentrations in the urban sediments. The result of these manipulations suggested that community function was, depending on the treatment, significantly altered but that stream community structure was not: function was not limited by lack of diversity - the community was functionally adaptable. This research contributes to a growing body of knowledge on the factors affecting the community structure of microorganisms and suggests several variables that should be consistently included in examinations of "wild" bacterial communities. If future studies consistently incorporated an agreed set of basic or core variables, the field of microbial ecology would benefit by making cross comparison and meta-analysis of related studies more practical.
Author: Philips Olugbemiga Akinwole Publisher: ISBN: Category : Electronic dissertations Languages : en Pages : 168
Book Description
Sedimentary microbial communities play a critical ecological role in lotic ecosystems and are responsible for numerous biogeochemical transformations, including dissolved organic matter (DOM) uptake, degradation, and mineralization. The goals of this study were to elucidate the benthic microbes responsible for utilization of humic DOM in streams and to assess overall variability in microbial biomass and community structure over time and across multiple spatial scales in stream networks, as DOM quality and quantity will likely change with stream order. In Chapter 2, multiple spatial patterns of microbial biomass and community structure were examined in stream sediments from two watersheds; the Neversink River watershed (NY; 1st, 3rd and 5th order streams sampled) and the White Clay Creek watershed (PA; 1st through 3rd order streams sampled). Microbial biomass and community structure were estimated by phospholipid phosphate and phospholipid fatty acids (PLFA) analyses. Multivariate analysis showed that sedimentary C:N ratios, percent carbon, sediment surface area and percent water content explained 68% of the variations in total microbial biomass. Overall, the magnitude of within stream variation in microbial biomass was small compared to the variability noted among streams and between watersheds. Principal component analysis (PCA) of PLFA profiles showed that microbial community structure displayed a distinct watershed-level biogeography, as well as variation along a stream order gradient. Chapter 3 demonstrated that benthic microbial biomass was seasonally dynamic and significantly correlated to a combination of high and low flood pulse counts, variability in daily flow and DOC concentration in the White Clay Creek. Additionally, the seasonal pattern of variation observed in microbial community structure was as a result of shift between the ratios of prokaryotic to eukaryotic component of the community. This shift was significantly correlated with seasonal changes in median daily flow, high and low flood pulse counts, DOC concentrations and water temperature. Compound-specific 13C analysis of PLFA showed that both bacterial and microeukaryotic stable carbon isotope ratios were heaviest in the spring and lightest in autumn or winter. Bacterial lipids were isotopically depleted on average by 2 - 5 / relative to δ13C of total organic carbon suggesting bacterial consumption of allochthonous organic matter, and enriched relative to δ13C algae-derived carbon source. In Chapter 4, heterotrophic microbes that metabolize humic DOM in a third-order stream were identified through trace-additions of 13C-labeled tree tissue leachate (13C-DOC) into stream sediment mesocosms. Microbial community structure was assessed using PLFA biomarkers, and metabolically active members were identified through 13C-PLFA analysis (PLFA-SIP). Comparison by PCA of the microbial communities in stream sediments and stream sediments incubated in both the presence and absence of 13C-DOC showed our mesocosm-based experimental design as sufficiently robust to investigate the utilization of 13C-DOC by sediment microbial communities. After 48 hours of incubation, PLFA-SIP identified heterotrophic α, β, and γ- proteobacteria and facultative anaerobic bacteria as the organisms primarily responsible for humic DOC consumption in streams and heterotrophic microeucaryotes as their predators. The evidence presented in this study shows a complex relationship between microbial community structure, environmental heterogeneity and utilization of humic DOC, indicating that humic DOC quality and quantity along with other hydro-ecological variables should be considered among the important factors that structure benthic microbial communities in lotic ecosystems.
Author: Stefan Schmutz Publisher: Springer ISBN: 3319732501 Category : Science Languages : en Pages : 562
Book Description
This open access book surveys the frontier of scientific river research and provides examples to guide management towards a sustainable future of riverine ecosystems. Principal structures and functions of the biogeosphere of rivers are explained; key threats are identified, and effective solutions for restoration and mitigation are provided. Rivers are among the most threatened ecosystems of the world. They increasingly suffer from pollution, water abstraction, river channelisation and damming. Fundamental knowledge of ecosystem structure and function is necessary to understand how human acitivities interfere with natural processes and which interventions are feasible to rectify this. Modern water legislation strives for sustainable water resource management and protection of important habitats and species. However, decision makers would benefit from more profound understanding of ecosystem degradation processes and of innovative methodologies and tools for efficient mitigation and restoration. The book provides best-practice examples of sustainable river management from on-site studies, European-wide analyses and case studies from other parts of the world. This book will be of interest to researchers in the field of aquatic ecology, river system functioning, conservation and restoration, to postgraduate students, to institutions involved in water management, and to water related industries.
Author: K. Ramesh Reddy Publisher: CRC Press ISBN: 0429531931 Category : Science Languages : en Pages : 926
Book Description
The globally important nature of wetland ecosystems has led to their increased protection and restoration as well as their use in engineered systems. Underpinning the beneficial functions of wetlands are a unique suite of physical, chemical, and biological processes that regulate elemental cycling in soils and the water column. This book provides an in-depth coverage of these wetland biogeochemical processes related to the cycling of macroelements including carbon, nitrogen, phosphorus, and sulfur, secondary and trace elements, and toxic organic compounds. In this synthesis, the authors combine more than 100 years of experience studying wetlands and biogeochemistry to look inside the black box of elemental transformations in wetland ecosystems. This new edition is updated throughout to include more topics and provide an integrated view of the coupled nature of biogeochemical cycles in wetland systems. The influence of the elemental cycles is discussed at a range of scales in the context of environmental change including climate, sea level rise, and water quality. Frequent examples of key methods and major case studies are also included to help the reader extend the basic theories for application in their own system. Some of the major topics discussed are: Flooded soil and sediment characteristics Aerobic-anaerobic interfaces Redox chemistry in flooded soil and sediment systems Anaerobic microbial metabolism Plant adaptations to reducing conditions Regulators of organic matter decomposition and accretion Major nutrient sources and sinks Greenhouse gas production and emission Elemental flux processes Remediation of contaminated soils and sediments Coupled C-N-P-S processes Consequences of environmental change in wetlands# The book provides the foundation for a basic understanding of key biogeochemical processes and its applications to solve real world problems. It is detailed, but also assists the reader with box inserts, artfully designed diagrams, and summary tables all supported by numerous current references. This book is an excellent resource for senior undergraduates and graduate students studying ecosystem biogeochemistry with a focus in wetlands and aquatic systems.
Author: marina Alberti Publisher: Springer Science & Business Media ISBN: 0387755101 Category : Science Languages : en Pages : 374
Book Description
This groundbreaking work is an attempt at providing a conceptual framework to synthesize urban and ecological dynamics into a common framework. The greatest challenge for urban ecologists in the next few decades is to understand the role humans play in urban ecosystems. The development of an integrated urban ecological approach is crucial to advance ecological research and to help planners and managers solve complex urban environmental issues. This book is a major step forward.
Author: Nathan G. Swenson Publisher: Springer Science & Business Media ISBN: 1461495423 Category : Computers Languages : en Pages : 217
Book Description
Functional and Phylogenetic Ecology in R is designed to teach readers to use R for phylogenetic and functional trait analyses. Over the past decade, a dizzying array of tools and methods were generated to incorporate phylogenetic and functional information into traditional ecological analyses. Increasingly these tools are implemented in R, thus greatly expanding their impact. Researchers getting started in R can use this volume as a step-by-step entryway into phylogenetic and functional analyses for ecology in R. More advanced users will be able to use this volume as a quick reference to understand particular analyses. The volume begins with an introduction to the R environment and handling relevant data in R. Chapters then cover phylogenetic and functional metrics of biodiversity; null modeling and randomizations for phylogenetic and functional trait analyses; integrating phylogenetic and functional trait information; and interfacing the R environment with a popular C-based program. This book presents a unique approach through its focus on ecological analyses and not macroevolutionary analyses. The author provides his own code, so that the reader is guided through the computational steps to calculate the desired metrics. This guided approach simplifies the work of determining which package to use for any given analysis. Example datasets are shared to help readers practice, and readers can then quickly turn to their own datasets.
Author: Thomas S. Bianchi Publisher: Princeton University Press ISBN: 1400839106 Category : Science Languages : en Pages : 417
Book Description
This textbook provides a unique and thorough look at the application of chemical biomarkers to aquatic ecosystems. Defining a chemical biomarker as a compound that can be linked to particular sources of organic matter identified in the sediment record, the book indicates that the application of these biomarkers for an understanding of aquatic ecosystems consists of a biogeochemical approach that has been quite successful but underused. This book offers a wide-ranging guide to the broad diversity of these chemical biomarkers, is the first to be structured around the compounds themselves, and examines them in a connected and comprehensive way. This timely book is appropriate for advanced undergraduate and graduate students seeking training in this area; researchers in biochemistry, organic geochemistry, and biogeochemistry; researchers working on aspects of organic cycling in aquatic ecosystems; and paleoceanographers, petroleum geologists, and ecologists. Provides a guide to the broad diversity of chemical biomarkers in aquatic environments The first textbook to be structured around the compounds themselves Describes the structure, biochemical synthesis, analysis, and reactivity of each class of biomarkers Offers a selection of relevant applications to aquatic systems, including lakes, rivers, estuaries, oceans, and paleoenvironments Demonstrates the utility of using organic molecules as tracers of processes occurring in aquatic ecosystems, both modern and ancient
Author: Habil. Jörg Lewandowski Publisher: MDPI ISBN: 3039289055 Category : Science Languages : en Pages : 438
Book Description
Recent years have seen a paradigm shift in our understanding of groundwater–surface water interactions: surface water and aquifers were long considered discrete, separate entities; they are now understood as integral components of a surface–subsurface continuum. This book provides an overview of current research advances and innovative approaches in groundwater–surface water interactions. The 20 research articles and 1 communication cover a wide range of thematic scopes, scales, and experimental and modelling methods across different disciplines (hydrology, aquatic ecology, biogeochemistry, and environmental pollution). The book identifies current knowledge gaps and reveals the challenges in establishing standardized measurement, observation, and assessment approaches. It includes current hot topcis with environmental and societal relevance such as eutrophication, retention of legacy, and emerging pollutants (e.g., pharmaceuticals and microplastics), urban water interfaces, and climate change impacts. The book demonstrates the relevance of processes at groundwater–surface water interfaces for (1) regional water balances and (2) quality and quantity of drinking water resources. As such, this book represents the long-awaited transfer of the above-mentioned paradigm shift in understanding of groundwater–surface water interactions from science to practice.
Author: Jie Liang
Author: Jie Liang
Author: Shane Elliott Perryman
Author: Chloé Shoshana Jessica Orland
Author: Philips Olugbemiga Akinwole
Author: Stefan Schmutz
Author: K. Ramesh Reddy
Author: marina Alberti
Author: Nathan G. Swenson
Author: Thomas S. Bianchi
Author: Habil. Jörg Lewandowski