Computational Intelligence and Pattern Analysis in Biology Informatics PDF Download

Author: Ujjwal Maulik
Publisher: John Wiley & Sons
ISBN: 1118097807
Category : Medical
Languages : en
Pages : 552

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Book Description
An invaluable tool in Bioinformatics, this unique volume provides both theoretical and experimental results, and describes basic principles of computational intelligence and pattern analysis while deepening the reader's understanding of the ways in which these principles can be used for analyzing biological data in an efficient manner. This book synthesizes current research in the integration of computational intelligence and pattern analysis techniques, either individually or in a hybridized manner. The purpose is to analyze biological data and enable extraction of more meaningful information and insight from it. Biological data for analysis include sequence data, secondary and tertiary structure data, and microarray data. These data types are complex and advanced methods are required, including the use of domain-specific knowledge for reducing search space, dealing with uncertainty, partial truth and imprecision, efficient linear and/or sub-linear scalability, incremental approaches to knowledge discovery, and increased level and intelligence of interactivity with human experts and decision makers Chapters authored by leading researchers in CI in biology informatics. Covers highly relevant topics: rational drug design; analysis of microRNAs and their involvement in human diseases. Supplementary material included: program code and relevant data sets correspond to chapters.

Author: Sanghamitra Bandyopadhyay
Publisher: World Scientific
ISBN: 9812708898
Category : Computers
Languages : en
Pages : 353

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Book Description
Bioinformatics, a field devoted to the interpretation and analysis of biological data using computational techniques, has evolved tremendously in recent years due to the explosive growth of biological information generated by the scientific community. Soft computing is a consortium of methodologies that work synergistically and provides, in one form or another, flexible information processing capabilities for handling real-life ambiguous situations. Several research articles dealing with the application of soft computing tools to bioinformatics have been published in the recent past; however, they are scattered in different journals, conference proceedings and technical reports, thus causing inconvenience to readers, students and researchers. This book, unique in its nature, is aimed at providing a treatise in a unified framework, with both theoretical and experimental results, describing the basic principles of soft computing and demonstrating the various ways in which they can be used for analyzing biological data in an efficient manner. Interesting research articles from eminent scientists around the world are brought together in a systematic way such that the reader will be able to understand the issues and challenges in this domain, the existing ways of tackling them, recent trends, and future directions. This book is the first of its kind to bring together two important research areas, soft computing and bioinformatics, in order to demonstrate how the tools and techniques in the former can be used for efficiently solving several problems in the latter. Sample Chapter(s). Chapter 1: Bioinformatics: Mining the Massive Data from High Throughput Genomics Experiments (160 KB). Contents: Overview: Bioinformatics: Mining the Massive Data from High Throughput Genomics Experiments (H Tang & S Kim); An Introduction to Soft Computing (A Konar & S Das); Biological Sequence and Structure Analysis: Reconstructing Phylogenies with Memetic Algorithms and Branch-and-Bound (J E Gallardo et al.); Classification of RNA Sequences with Support Vector Machines (J T L Wang & X Wu); Beyond String Algorithms: Protein Sequence Analysis Using Wavelet Transforms (A Krishnan & K-B Li); Filtering Protein Surface Motifs Using Negative Instances of Active Sites Candidates (N L Shrestha & T Ohkawa); Distill: A Machine Learning Approach to Ab Initio Protein Structure Prediction (G Pollastri et al.); In Silico Design of Ligands Using Properties of Target Active Sites (S Bandyopadhyay et al.); Gene Expression and Microarray Data Analysis: Inferring Regulations in a Genomic Network from Gene Expression Profiles (N Noman & H Iba); A Reliable Classification of Gene Clusters for Cancer Samples Using a Hybrid Multi-Objective Evolutionary Procedure (K Deb et al.); Feature Selection for Cancer Classification Using Ant Colony Optimization and Support Vector Machines (A Gupta et al.); Sophisticated Methods for Cancer Classification Using Microarray Data (S-B Cho & H-S Park); Multiobjective Evolutionary Approach to Fuzzy Clustering of Microarray Data (A Mukhopadhyay et al.). Readership: Graduate students and researchers in computer science, bioinformatics, computational and molecular biology, artificial intelligence, data mining, machine learning, electrical engineering, system science; researchers in pharmaceutical industries.

Author: Gary B. Fogel
Publisher: John Wiley & Sons
ISBN: 0470199083
Category : Computers
Languages : en
Pages : 377

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Book Description
Combining biology, computer science, mathematics, and statistics, the field of bioinformatics has become a hot new discipline with profound impacts on all aspects of biology and industrial application. Now, Computational Intelligence in Bioinformatics offers an introduction to the topic, covering the most relevant and popular CI methods, while also encouraging the implementation of these methods to readers' research.

Author: Mourad Elloumi
Publisher: John Wiley & Sons
ISBN: 1119078857
Category : Technology & Engineering
Languages : en
Pages : 655

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Book Description
A comprehensive overview of high-performance pattern recognition techniques and approaches to Computational Molecular Biology This book surveys the developments of techniques and approaches on pattern recognition related to Computational Molecular Biology. Providing a broad coverage of the field, the authors cover fundamental and technical information on these techniques and approaches, as well as discussing their related problems. The text consists of twenty nine chapters, organized into seven parts: Pattern Recognition in Sequences, Pattern Recognition in Secondary Structures, Pattern Recognition in Tertiary Structures, Pattern Recognition in Quaternary Structures, Pattern Recognition in Microarrays, Pattern Recognition in Phylogenetic Trees, and Pattern Recognition in Biological Networks. Surveys the development of techniques and approaches on pattern recognition in biomolecular data Discusses pattern recognition in primary, secondary, tertiary and quaternary structures, as well as microarrays, phylogenetic trees and biological networks Includes case studies and examples to further illustrate the concepts discussed in the book Pattern Recognition in Computational Molecular Biology: Techniques and Approaches is a reference for practitioners and professional researches in Computer Science, Life Science, and Mathematics. This book also serves as a supplementary reading for graduate students and young researches interested in Computational Molecular Biology.

Author: Siddhartha Bhattacharyya
Publisher: Academic Press
ISBN: 0323851797
Category : Computers
Languages : en
Pages : 420

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Book Description
The field of computational intelligence has grown tremendously over that past five years, thanks to evolving soft computing and artificial intelligent methodologies, tools and techniques for envisaging the essence of intelligence embedded in real life observations. Consequently, scientists have been able to explain and understand real life processes and practices which previously often remain unexplored by virtue of their underlying imprecision, uncertainties and redundancies, and the unavailability of appropriate methods for describing the incompleteness and vagueness of information represented. With the advent of the field of computational intelligence, researchers are now able to explore and unearth the intelligence, otherwise insurmountable, embedded in the systems under consideration. Computational Intelligence is now not limited to only specific computational fields, it has made inroads in signal processing, smart manufacturing, predictive control, robot navigation, smart cities, and sensor design to name a few. Recent Trends in Computational Intelligence Enabled Research: Theoretical Foundations and Applications explores the use of this computational paradigm across a wide range of applied domains which handle meaningful information. Chapters investigate a broad spectrum of the applications of computational intelligence across different platforms and disciplines, expanding our knowledge base of various research initiatives in this direction. This volume aims to bring together researchers, engineers, developers and practitioners from academia and industry working in all major areas and interdisciplinary areas of computational intelligence, communication systems, computer networks, and soft computing. - Provides insights into the theory, algorithms, implementation, and application of computational intelligence techniques - Covers a wide range of applications of deep learning across various domains which are researching the applications of computational intelligence - Investigates novel techniques and reviews the state-of-the-art in the areas of machine learning, computer vision, soft computing techniques

Author: Arpad Kelemen
Publisher: Springer Science & Business Media
ISBN: 3540768025
Category : Computers
Languages : en
Pages : 337

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Book Description
Bioinformatics involve the creation and advancement of algorithms using techniques including computational intelligence, applied mathematics and statistics, informatics, and biochemistry to solve biological problems usually on the molecular level. This book deals with the application of computational intelligence in bioinformatics. Addressing the various issues of bioinformatics using different computational intelligence approaches is the novelty of this edited volume.

Author: Ken Nguyen
Publisher: John Wiley & Sons
ISBN: 1119273757
Category : Science
Languages : en
Pages : 272

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Book Description
Covers the fundamentals and techniques of multiple biological sequence alignment and analysis, and shows readers how to choose the appropriate sequence analysis tools for their tasks This book describes the traditional and modern approaches in biological sequence alignment and homology search. This book contains 11 chapters, with Chapter 1 providing basic information on biological sequences. Next, Chapter 2 contains fundamentals in pair-wise sequence alignment, while Chapters 3 and 4 examine popular existing quantitative models and practical clustering techniques that have been used in multiple sequence alignment. Chapter 5 describes, characterizes and relates many multiple sequence alignment models. Chapter 6 describes how traditionally phylogenetic trees have been constructed, and available sequence knowledge bases can be used to improve the accuracy of reconstructing phylogeny trees. Chapter 7 covers the latest methods developed to improve the run-time efficiency of multiple sequence alignment. Next, Chapter 8 covers several popular existing multiple sequence alignment server and services, and Chapter 9 examines several multiple sequence alignment techniques that have been developed to handle short sequences (reads) produced by the Next Generation Sequencing technique (NSG). Chapter 10 describes a Bioinformatics application using multiple sequence alignment of short reads or whole genomes as input. Lastly, Chapter 11 provides a review of RNA and protein secondary structure prediction using the evolution information inferred from multiple sequence alignments. • Covers the full spectrum of the field, from alignment algorithms to scoring methods, practical techniques, and alignment tools and their evaluations • Describes theories and developments of scoring functions and scoring matrices •Examines phylogeny estimation and large-scale homology search Multiple Biological Sequence Alignment: Scoring Functions, Algorithms and Applications is a reference for researchers, engineers, graduate and post-graduate students in bioinformatics, and system biology and molecular biologists. Ken Nguyen, PhD, is an associate professor at Clayton State University, GA, USA. He received his PhD, MSc and BSc degrees in computer science all from Georgia State University. His research interests are in databases, parallel and distribute computing and bioinformatics. He was a Molecular Basis of Disease fellow at Georgia State and is the recipient of the highest graduate honor at Georgia State, the William M. Suttles Graduate Fellowship. Xuan Guo, PhD, is a postdoctoral associate at Oak Ridge National Lab, USA. He received his PhD degree in computer science from Georgia State University in 2015. His research interests are in bioinformatics, machine leaning, and cloud computing. He is an editorial assistant of International Journal of Bioinformatics Research and Applications. Yi Pan, PhD, is a Regents' Professor of Computer Science and an Interim Associate Dean and Chair of Biology at Georgia State University. He received his BE and ME in computer engineering from Tsinghua University in China and his PhD in computer science from the University of Pittsburgh. Dr. Pan's research interests include parallel and distributed computing, optical networks, wireless networks and bioinformatics. He has published more than 180 journal papers with about 60 papers published in various IEEE/ACM journals. He is co-editor along with Albert Y. Zomaya of the Wiley Series in Bioinformatics.

Author: Kose, Utku
Publisher: IGI Global
ISBN: 1522547703
Category : Technology & Engineering
Languages : en
Pages : 411

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Book Description
Technological tools and computational techniques have enhanced the healthcare industry. These advancements have led to significant progress and novel opportunities for biomedical engineering. Nature-Inspired Intelligent Techniques for Solving Biomedical Engineering Problems is a pivotal reference source for emerging scholarly research on trends and techniques in the utilization of nature-inspired approaches in biomedical engineering. Featuring extensive coverage on relevant areas such as artificial intelligence, clinical decision support systems, and swarm intelligence, this publication is an ideal resource for medical practitioners, professionals, students, engineers, and researchers interested in the latest developments in biomedical technologies.

Author: Felipe López-Saucedo
Publisher: Bentham Science Publishers
ISBN: 9815136933
Category : Technology & Engineering
Languages : en
Pages : 279

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Book Description
Synthesis of Nanomaterials is a beginner’s guide to the synthesis and characterization of biomaterials for medical devices and implants. It presents 8 chapters explaining the use of biomaterials in medicine and pharmacology. The concepts are explained with the guidance of specialists who present the principal techniques and methods to obtain high-performance polymers and composite materials. Starting with an introduction to the subject, the book explains nanomaterials synthesis and progresses towards engineering applications. The chapters also cover modern biomaterials such as stimuli-responsive biomaterials, hydrogels, and self-healing materials. One chapter is dedicated to computational and theoretical techniques in biomedicine and a final chapter covering microencapsulation for advanced drug delivery rounds up the contents. Synthesis of Nanomaterials is a primary reference book for undergraduate and graduate students as well as professors involved in multidisciplinary research and teaching programs.

Author: Sujata Dash
Publisher: John Wiley & Sons
ISBN: 111971124X
Category : Computers
Languages : en
Pages : 450

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Book Description
BIOMEDICAL DATA MINING FOR INFORMATION RETRIEVAL This book not only emphasizes traditional computational techniques, but discusses data mining, biomedical image processing, information retrieval with broad coverage of basic scientific applications. Biomedical Data Mining for Information Retrieval comprehensively covers the topic of mining biomedical text, images and visual features towards information retrieval. Biomedical and health informatics is an emerging field of research at the intersection of information science, computer science, and healthcare and brings tremendous opportunities and challenges due to easily available and abundant biomedical data for further analysis. The aim of healthcare informatics is to ensure the high-quality, efficient healthcare, better treatment and quality of life by analyzing biomedical and healthcare data including patient’s data, electronic health records (EHRs) and lifestyle. Previously, it was a common requirement to have a domain expert to develop a model for biomedical or healthcare; however, recent advancements in representation learning algorithms allows us to automatically to develop the model. Biomedical image mining, a novel research area, due to the vast amount of available biomedical images, increasingly generates and stores digitally. These images are mainly in the form of computed tomography (CT), X-ray, nuclear medicine imaging (PET, SPECT), magnetic resonance imaging (MRI) and ultrasound. Patients’ biomedical images can be digitized using data mining techniques and may help in answering several important and critical questions relating to healthcare. Image mining in medicine can help to uncover new relationships between data and reveal new useful information that can be helpful for doctors in treating their patients. Audience Researchers in various fields including computer science, medical informatics, healthcare IOT, artificial intelligence, machine learning, image processing, clinical big data analytics.