Combinatorial Pattern Matching Algorithms in Computational Biology Using Perl and R PDF Download

Author: Gabriel Valiente
Publisher: CRC Press
ISBN: 1420069748
Category : Computers
Languages : en
Pages : 370

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Book Description
Emphasizing the search for patterns within and between biological sequences, trees, and graphs, Combinatorial Pattern Matching Algorithms in Computational Biology Using Perl and R shows how combinatorial pattern matching algorithms can solve computational biology problems that arise in the analysis of genomic, transcriptomic, proteomic, metabolomic

Author: Gregory Kucherov
Publisher: Springer
ISBN: 3642024416
Category : Computers
Languages : en
Pages : 381

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Book Description
This book constitutes the refereed proceedings of the 20th Annual Symposium on Combinatorial Pattern Matching, CPM 2009, held in Lille, France in June 2009. The 27 revised full papers presented together with 3 invited talks were carefully reviewed and selected from 63 submissions. The papers address all areas related to combinatorial pattern matching and its applications, such as coding and data compression, computational biology, data mining, information retrieval, natural language processing, pattern recognition, string algorithms, string processing in databases, symbolic computing and text searching.

Author: Paolo Ferragina
Publisher: Springer
ISBN: 3540690689
Category : Computers
Languages : en
Pages : 327

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Book Description
The papers contained in this volume were presented at the 19th Annual S- posium on Combinatorial Pattern Matching (CPM 2008) held at the University of Pisa, Italy, June 18–20, 2008. All the papers presented at the conference are originalresearchcontributions on computational pattern matching and analysis. They were selected from 78 submissions. Each submission was reviewed by at least three reviewers. The committee decided to accept 25 papers. The programme also includes three invited talks by Daniel M. Gus?eld from the University of California, Davis, USA, J. Ian Munro from the University of Waterloo, Canada, and Prabhakar Raghavan from Yahoo! Research, USA. The objective of the annual CPM meetings is to provide an international forum for research in combinatorial pattern matching and related applications. It addresses issues of searching and matching strings and more complicated p- terns such as trees, regular expressions, graphs, point sets, and arrays. The goal is to derive non-trivialcombinatorialproperties of suchstructures and to exploit these properties in order to either achieve superior performance for the cor- sponding computational problems or pinpoint conditions under which searches cannotbeperformede?ciently. Themeeting also dealswith problems incom- tational biology, data compression, data mining, coding, information retrieval, natural language processing and pattern recognition.

Author: Alexander S. Kulikov
Publisher: Springer
ISBN: 3319075667
Category : Computers
Languages : en
Pages : 301

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Book Description
This book constitutes the refereed proceedings of the 25th Annual Symposium on Combinatorial Pattern Matching, CPM 2014, held in Moscow, Russia, in June 2014. The 28 revised full papers presented together with 5 invited talks were carefully reviewed and selected from 54 submissions. The papers address issues of searching and matching strings and more complicated patterns such as trees; regular expressions; graphs; point sets; and arrays. The goal is to derive combinatorial properties of such structures and to exploit these properties in order to achieve superior performance for the corresponding computational problems. The meeting also deals with problems in computational biology; data compression and data mining; coding; information retrieval; natural language processing; and pattern recognition.

Author: Alberto Apostolico
Publisher: Springer
ISBN: 3540315624
Category : Computers
Languages : en
Pages : 453

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Book Description
This book constitutes the refereed proceedings of the 16th Annual Symposium on Combinatorial Pattern Matching, CPM 2005, held in Jeju island, Korea on June 19-22, 2005. The 37 revised full papers presented were carefully reviewed and selected from 129 submissions. They constitute original research contributions in combinatorial pattern matching and its applications. Among the application fields addressed are computational biology, bioinformatics, genomics, proteinomics, data compression, Sequence Analysis and Graphs, information retrieval, data analysis, and pattern recognition.

Author: Sorin Draghici
Publisher: CRC Press
ISBN: 1439809763
Category : Computers
Languages : en
Pages : 1036

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Book Description
Richly illustrated in color, Statistics and Data Analysis for Microarrays Using R and Bioconductor, Second Edition provides a clear and rigorous description of powerful analysis techniques and algorithms for mining and interpreting biological information. Omitting tedious details, heavy formalisms, and cryptic notations, the text takes a hands-on,

Author: Amihood Amir
Publisher: Springer Science & Business Media
ISBN: 3540422714
Category : Computers
Languages : en
Pages : 281

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Book Description
This book constitutes the refereed proceedings of the 12th Annual Symposium on Combinatorial Pattern Matching, CPM 2001, held in Jerusalem, Israel, in July 2001. The 21 revised papers presented together with one invited paper were carefully reviewed and selected from 35 submissions. The papers are devoted to current theoretical and algorithmic issues of searching and matching strings and more complicated patterns such as trees, regular expressions, graphs, point sets, and arrays as well as to advanced applications of CPM in areas such as the Internet, computational biology, multimedia systems, information retrieval, data compression, coding, computer vision, and pattern recognition.

Author: Ehud Lamm
Publisher: CRC Press
ISBN: 1420087959
Category : Science
Languages : en
Pages : 346

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Book Description
The area of biologically inspired computing, or biological computation, involves the development of new, biologically based techniques for solving difficult computational problems. A unified overview of computer science ideas inspired by biology, Biological Computation presents the most fundamental and significant concepts in this area. In the book, students discover that bacteria communicate, that DNA can be used for performing computations, how evolution solves optimization problems, that the way ants organize their nests can be applied to solve clustering problems, and what the human immune system can teach us about protecting computer networks. The authors discuss more biological examples such as these, along with the computational techniques developed from these scenarios. The text focuses on cellular automata, evolutionary computation, neural networks, and molecular computation. Each chapter explores the biological background, describes the computational techniques, gives examples of applications, discusses possible variants of the techniques, and includes exercises and solutions. The authors use the examples and exercises to illustrate key ideas and techniques. Clearly conveying the essence of the major computational approaches in the field, this book brings students to the point where they can either produce a working implementation of the techniques or effectively use one of the many available implementations. Moreover, the techniques discussed reflect fundamental principles that can be applied beyond bio-inspired computing. Supplementary material is available on Dr. Unger's website.

Author: Suleyman C. Sahinalp
Publisher: Springer
ISBN: 354027801X
Category : Computers
Languages : en
Pages : 496

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Book Description
This book constitutes the refereed proceedings of the 15th Annual Symposium on Combinatorial Pattern Matching, CPM 2004, held in Istanbul, Turkey in July 2004. The 36 revised full papers presented were carefully reviewed and selected from 79 submissions. The papers are devoted to current theoretical and computational aspects of searching and matching of strings and more complicate patterns, such as trees, regular expressions, graphs, point sets, and arrays. Among the application fields addressed are computational biology, bioinformatics, genomics, proteinomics, the web, data compression, coding, multimedia, information retrieval, data analysis, pattern recognition, and computer vision.

Author: Bin Ma
Publisher: Springer Science & Business Media
ISBN: 3540734368
Category : Computers
Languages : en
Pages : 377

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Book Description
This volume features select refereed proceedings from the 18th Annual Symposium on Combinatorial Pattern Matching. Collectively, the papers provide great insights into the most recent advances in combinatorial pattern matching. They are organized into topical sections covering algorithmic techniques, approximate pattern matching, data compression, computational biology, pattern analysis, suffix arrays and trees, and algorithmic techniques.