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Biomolecular Information Processing

Biomolecular Information Processing PDF Author: Evgeny Katz
Publisher: John Wiley & Sons
ISBN: 3527645497
Category : Science
Languages : en
Pages : 390

Book Description
Edited by a renowned and much cited chemist, this book covers the whole span of molecular computers that are based on biomolecules. The contributions by all the major scientists in the field provide an excellent overview of the latest developments in this rapidly expanding area. A must-have for all researchers working on this very hot topic. Perfectly complements Molecular and Supramolecular Information Processing, also by Prof. Katz, and available as a two-volume set.

Investigations

Investigations PDF Author: Stuart A. Kauffman
Publisher: Oxford University Press
ISBN: 0190283858
Category : Science
Languages : en
Pages : 469

Book Description
"It may be that I have stumbled upon an adequate description of life itself." These modest yet profound words trumpet an imminent paradigm shift in scientific, economic, and technological thinking. In the tradition of Schrödinger's classic What Is Life?, Kauffman's Investigations is a tour-de-force exploration of the very essence of life itself, with conclusions that radically undermine the scientific approaches on which modern science rests--the approaches of Newton, Boltzman, Bohr, and Einstein. Building on his pivotal ideas about order and evolution in complex life systems, Kauffman finds that classical science does not take into account that physical systems--such as people in a biosphere--effect their dynamic environments in addition to being affected by them. These systems act on their own behalf as autonomous agents, but what defines them as such? In other words, what is life? Kauffman supplies a novel answer that goes beyond traditional scientific thinking by defining and explaining autonomous agents and work in the contexts of thermodynamics and of information theory. Much of Investigations unpacks the progressively surprising implications of his definition. Significantly, he sets the stages for a technological revolution in the coming decades. Scientists and engineers may soon seek to create autonomous agents--both organic and mechanical--that can not only construct things and work, but also reproduce themselves! Kauffman also lays out a foundation for a new concept of organization, and explores the requirements for the emergence of a general biology that will transcend terrestrial biology to seek laws governing biospheres anywhere in the cosmos. Moreover, he presents four candidate laws to explain how autonomous agents co-create their biosphere and the startling idea of a "co-creating" cosmos. A showcase of Kauffman's most fundamental and significant ideas, Investigations presents a new way of thinking about the fundamentals of general biology that will change the way we understand life itself--on this planet and anywhere else in the cosmos.

Models of the Ecological Hierarchy

Models of the Ecological Hierarchy PDF Author: Ferenc Jordan
Publisher: Newnes
ISBN: 0444593969
Category : Science
Languages : en
Pages : 596

Book Description
"Based on selected papers covering the presentations at the 7th European Conference on Ecological Modelling, organized by ISEM and hosted by The Microsoft Research--University of Trento Center for Computational and Systems Biology from 30 May to 2 June, 2011 in Riva del Garde, Italy"--P. xi.

The Geochemical Origin of Microbes

The Geochemical Origin of Microbes PDF Author: William F. Martin
Publisher: CRC Press
ISBN: 1003859526
Category : Science
Languages : en
Pages : 249

Book Description
This is a textbook covering the transition from energy releasing reactions on the early Earth to energy releasing reactions that fueled growth in the first microbial cells. It is for teachers and college students with an interest in microbiology, geosciences, biochemistry, evolution, or all of the above. The scope of the book is a quantum departure from existing “origin of life” books in that it starts with basic chemistry and links energy-releasing geochemical processes to the reactions of microbial metabolism. The text reaches across disciplines, providing students of the geosciences an origins/biology interface and bringing a geochemistry/origins interface to students of microbiology and evolution. Beginning with physical chemistry and transitioning across metabolic networks into microbiology, the timeline documents chemical events and organizational states in hydrothermal vents – the only environments known that bridge the gap between spontaneous chemical reactions that we can still observe in nature today and the physiology of microbes that live from H2, CO2, ammonia, phosphorus, inorganic salts and water. Life is a chemical reaction. What it is and how it arose are two sides of the same coin. Key Features Provides clear connections between geochemical reactions and microbial metabolism Focuses on chemical mechanisms and transition metals Richly illustrated with color figures explaining reactions and processes Covers the origin of the Earth, the origin of metabolism, the origin of protein synthesis and genetic information as well as the escape into the wild of the first free-living cells: Bacteria and Archaea

Genesis - In The Beginning

Genesis - In The Beginning PDF Author: Joseph Seckbach
Publisher: Springer Science & Business Media
ISBN: 9400729413
Category : Science
Languages : en
Pages : 911

Book Description
Genesis – In The Beginning deals with the origin and diversity of Life and early biological evolution and discusses the question of where (hot or cold sources) and when the beginning of Life took place. Among the sections are chapters dealing with prebiotic chemical processes and considering self-replication of polymers in mineral habitats. One chapter is dedicated to the photobiological regime on early Earth and the emergence of Life. This volume covers the role of symmetry, information and order (homochrial biomolecules) in the beginning of Life. The models of protocells and the genetic code with gene transfer are important topics in this volume. Three chapters discuss the Panspermia hypothesis (to answer “Are we from outer Space?”). Other chapters cover the Astrobiological aspects of Life in the Universe in extraterrestrial Planets of the Solar System and deal with cometary hydrosphere (and its connection to Earth). We conclude with the history and frontiers of Astrobiogy.

Between Necessity and Probability: Searching for the Definition and Origin of Life

Between Necessity and Probability: Searching for the Definition and Origin of Life PDF Author: Radu Popa
Publisher: Springer Science & Business Media
ISBN: 9783540204909
Category : Science
Languages : en
Pages : 280

Book Description
Systematically explores the early origins and basic definition of life. Investigates the major theories of the origins of life in light of modern research with the aim of distinguishing between the necessary and the optional and between deterministic and random influences in the emergence of what we call ‘life.’ Treats and views life as a cosmic phenomenon whose emergence and driving force should be viewed independently from its Earth-bound natural history. Synthesizes all the fundamental life-related developments in a comprehensive scenario, and makes the argument that understanding life in its broadest context requires a material-independent perspective that identifies its essential fingerprints

Methods, Models, Simulations and Approaches Towards a General Theory of Change - Proceedings of the Fifth National Conference on Systems Science

Methods, Models, Simulations and Approaches Towards a General Theory of Change - Proceedings of the Fifth National Conference on Systems Science PDF Author: Gianfranco Minati
Publisher: World Scientific
ISBN: 9814383325
Category : Computers
Languages : en
Pages : 725

Book Description
The book contains the Proceedings of the 2010 Conference of the Italian Systems Society. Papers deal with the interdisciplinary study of processes of changing related to a wide variety of specific disciplinary aspects. Classical attempts to deal with them, based on generalising approaches used to study the movement of bodies and environmental influence, have included ineffective reductionistic simplifications. Indeed changing also relates, for instance, to processes of acquisition and varying properties such as for software; growing and aging biological systems; learning/cognitive systems; and socio-economic systems growing and developing through innovations. Some approaches to modelling such processes are based on considering changes in structure, e.g., phase-transitions. Other approaches are based on considering (1) periodic changes in structure as for processes of self-organisation; (2) non-periodic but coherent changes in structure, as for processes of emergence; (3) the quantum level of description. Papers in the book study the problem considering its transdisciplinary nature, i.e., systemic properties studied per se and not within specific disciplinary contexts. The aim of these studies is to outline a transdisciplinary theory of change in systemic properties. Such a theory should have simultaneous, corresponding and eventually hierarchical disciplinary aspects as expected for a general theory of emergence. Within this transdisciplinary context, specific disciplinary research activities and results are assumed to be mutually represented as within a philosophical and conceptual framework based on the theoretical centrality of the observer and conceptual non-separability of context and observer, related to logically open systems and Quantum Entanglement. Contributions deal with such issues in interdisciplinary ways considering theoretical aspects and applications from Physics, Cognitive Science, Biology, Artificial Intelligence, Economics, Architecture, Philosophy, Music and Social Systems.

Biomedia

Biomedia PDF Author: Eugene Thacker
Publisher: U of Minnesota Press
ISBN: 9781452906867
Category : Bioinformatics
Languages : en
Pages : 248

Book Description


Evolution "On Purpose"

Evolution Author: Peter A. Corning
Publisher: MIT Press
ISBN: 026254640X
Category : Science
Languages : en
Pages : 391

Book Description
A unique exploration of teleonomy—also known as “evolved purposiveness”—as a major influence in evolution by a broad range of specialists in biology and the philosophy of science. The evolved purposiveness of living systems, termed “teleonomy” by chronobiologist Colin Pittendrigh, has been both a major outcome and causal factor in the history of life on Earth. Many theorists have appreciated this over the years, going back to Lamarck and even Darwin in the nineteenth century. In the mid-twentieth century, however, the complex, dynamic process of evolution was simplified into the one-way, bottom-up, single gene-centered paradigm widely known as the modern synthesis. In Evolution “On Purpose,” edited by Peter A. Corning, Stuart A. Kauffman, Denis Noble, James A. Shapiro, Richard I. Vane-Wright, and Addy Pross, some twenty theorists attempt to modify this reductive approach by exploring in depth the different ways in which living systems have themselves shaped the course of evolution. Evolution “On Purpose” puts forward a more inclusive theoretical synthesis that goes far beyond the underlying principles and assumptions of the modern synthesis to accommodate work since the 1950s in molecular genetics, developmental biology, epigenetic inheritance, genomics, multilevel selection, niche construction, physiology, behavior, biosemiotics, chemical reaction theory, and other fields. In the view of the authors, active biological processes are responsible for the direction and the rate of evolution. Essays in this collection grapple with topics from the two-way “read-write” genome to cognition and decision-making in plants to the niche-construction activities of many organisms to the self-making evolution of humankind. As this collection compellingly shows, and as bacterial geneticist James Shapiro emphasizes, “The capacity of living organisms to alter their own heredity is undeniable.”

Design and Information in Biology

Design and Information in Biology PDF Author: J. A. Bryant
Publisher: WIT Press
ISBN: 1853128538
Category : Science
Languages : en
Pages : 513

Book Description
Highlighted with individual contributions from eminent specialists, these multiauthored volumes combine authority, inspiration and state-of-the-art knowledge. Both informative and inspiring they are designed to appeal to scientists and interested laypeople alike. Volume 2 complements and extends the scope of the first, with the biological viewpoint being stressed. Following an introductory chapter on design as understood in biology, the various aspects of the biological information revolution are addressed. Areas discussed include molecular structure, the genome, development, and neural networks. A section on information theory provides a link with engineering, and the scope is also broadened to include the implications of motion in nature and engineering.

55th Anniversary of Ivan Barnes: Microbial Communities of Serpentinite-Hosted Ecosystems

55th Anniversary of Ivan Barnes: Microbial Communities of Serpentinite-Hosted Ecosystems PDF Author: Nancy Merino
Publisher: Frontiers Media SA
ISBN: 2832544592
Category : Science
Languages : en
Pages : 188

Book Description
Serpentinization is a reaction that involves the hydration of ferromagnesium minerals (e.g., olivine, pyroxenes), resulting in the production of hydrogen gas and reduced carbon compounds. This reaction also leads to the formation of mineral carbonates, and highly alkaline and reducing fluids. Microorganisms have adapted to such extremes and robust microbial communities were discovered at several locations, including the Mid-Atlantic Ridge, Mariana Forearc, the Cabeço de Vide Aquifer, the Cedars, the Coast Range Ophiolite Microbial Observatory, Hakuba Happo, the Samail ophiolite, the Voltri Massif, and the Zambales ophiolite. These locations represent a range of pressure and temperature conditions, demonstrating that serpentinization is a ubiquitous geologic process occurring at subduction zones, mid-ocean ridges, and passive margins. This process is also thought to have supported early life because of the availability of reduced products and the presence of geochemical disequilibria.