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Bayesian Learning for High-dimensional Nonlinear Dynamical Systems

Bayesian Learning for High-dimensional Nonlinear Dynamical Systems PDF Author: Jing Lin (Ph. D.)
Publisher:
ISBN:
Category :
Languages : en
Pages : 567

Book Description
The rapidly-growing computational power and the increasing capability of uncertainty quantification, statistical inference, and machine learning have opened up new opportunities for utilizing data to assist, identify and refine physical models. In this thesis, we focus on Bayesian learning for a particular class of models: high-dimensional nonlinear dynamical systems, which have been commonly used to predict a wide range of transient phenomena including fluid flows, heat transfer, biogeochemical dynamics, and other advection-diffusion-reaction-based transport processes. Even though such models often express the differential form of fundamental laws, they commonly contain uncertainty in their initial and boundary values, parameters, forcing and even formulation. Learning such components from sparse observation data by principled Bayesian inference is very challenging due to the systems’ high-dimensionality and nonlinearity. We systematically study the theoretical and algorithmic properties of a Bayesian learning methodology built upon previous efforts in our group to address this challenge. Our systematic study breaks down into the three hierarchical components of the Bayesian learning and we develop new numerical schemes for each. The first component is on uncertainty quantification for stochastic dynamical systems and fluid flows. We study dynamic low-rank approximations using the dynamically orthogonal (DO) equations including accuracy and computational costs, and develop new numerical schemes for re-orthonormalization, adaptive subspace augmentation, residual-driven closure, and stochastic Navier-Stokes integration. The second part is on Bayesian data assimilation, where we study the properties of and connections among the different families of nonlinear and non-Gaussian filters. We derive an ensemble square-root filter based on minimal-correction second-moment matching that works especially well under the adversity of small ensemble size, sparse observations and chaotic dynamics. We also obtain a localization technique for filtering with high-dimensional systems that can be applied to nonlinear non-Gaussian inference with both brute force Monte Carlo (MC) and reduced subspace modeling in a unified way. Furthermore, we develop a mutual-information-based adaptive sampling strategy for filtering to identify the most informative observations with respect to the state variables and/or parameters, utilizing the sub-modularity of mutual information due to the conditional independence of observation noise. The third part is on active Bayesian model learning, where we have a discrete set of candidate dynamical models and we infer the model formulation that best explains the data using principled Bayesian learning. To predict the observations that are most useful to learn the model formulation, we further extend the above adaptive sampling strategy to identify the data that are expected to be most informative with respect to both state variables and the uncertain model identity. To investigate and showcase the effectiveness and efficiency of our theoretical and numerical advances for uncertainty quantification, Bayesian data assimilation, and active Bayesian learning with stochastic nonlinear high-dimensional dynamical systems, we apply our dynamic data-driven reduced subspace approach to several dynamical systems and compare our results against those of brute force MC and other existing methods. Specifically, we analyze our advances using several drastically different dynamical regimes modeled by the nonlinear Lorenz-96 ordinary differential equations as well as turbulent bottom gravity current dynamics modeled by the 2-D unsteady incompressible Reynolds-averaged Navier-Stokes (RANS) partial differential equations. We compare the accuracy, efficiency, and robustness of different methodologies and algorithms. With the Lorenz- 96 system, we show how the performance differs under periodic, weakly chaotic, and very chaotic dynamics and under different observation layouts. With the bottom gravity current dynamics, we show how model parameters, domain geometries, initial fields, and boundary forcing formulations can be identified and how the Bayesian methodology performs when the candidate model space does not contain the true model. The results indicate that our active Bayesian learning framework can better infer the state variables and dynamical model identity with fewer observations than many alternative approaches in the literature.

Bayesian Learning for High-dimensional Nonlinear Dynamical Systems

Bayesian Learning for High-dimensional Nonlinear Dynamical Systems PDF Author: Jing Lin (Ph. D.)
Publisher:
ISBN:
Category :
Languages : en
Pages : 567

Book Description
The rapidly-growing computational power and the increasing capability of uncertainty quantification, statistical inference, and machine learning have opened up new opportunities for utilizing data to assist, identify and refine physical models. In this thesis, we focus on Bayesian learning for a particular class of models: high-dimensional nonlinear dynamical systems, which have been commonly used to predict a wide range of transient phenomena including fluid flows, heat transfer, biogeochemical dynamics, and other advection-diffusion-reaction-based transport processes. Even though such models often express the differential form of fundamental laws, they commonly contain uncertainty in their initial and boundary values, parameters, forcing and even formulation. Learning such components from sparse observation data by principled Bayesian inference is very challenging due to the systems’ high-dimensionality and nonlinearity. We systematically study the theoretical and algorithmic properties of a Bayesian learning methodology built upon previous efforts in our group to address this challenge. Our systematic study breaks down into the three hierarchical components of the Bayesian learning and we develop new numerical schemes for each. The first component is on uncertainty quantification for stochastic dynamical systems and fluid flows. We study dynamic low-rank approximations using the dynamically orthogonal (DO) equations including accuracy and computational costs, and develop new numerical schemes for re-orthonormalization, adaptive subspace augmentation, residual-driven closure, and stochastic Navier-Stokes integration. The second part is on Bayesian data assimilation, where we study the properties of and connections among the different families of nonlinear and non-Gaussian filters. We derive an ensemble square-root filter based on minimal-correction second-moment matching that works especially well under the adversity of small ensemble size, sparse observations and chaotic dynamics. We also obtain a localization technique for filtering with high-dimensional systems that can be applied to nonlinear non-Gaussian inference with both brute force Monte Carlo (MC) and reduced subspace modeling in a unified way. Furthermore, we develop a mutual-information-based adaptive sampling strategy for filtering to identify the most informative observations with respect to the state variables and/or parameters, utilizing the sub-modularity of mutual information due to the conditional independence of observation noise. The third part is on active Bayesian model learning, where we have a discrete set of candidate dynamical models and we infer the model formulation that best explains the data using principled Bayesian learning. To predict the observations that are most useful to learn the model formulation, we further extend the above adaptive sampling strategy to identify the data that are expected to be most informative with respect to both state variables and the uncertain model identity. To investigate and showcase the effectiveness and efficiency of our theoretical and numerical advances for uncertainty quantification, Bayesian data assimilation, and active Bayesian learning with stochastic nonlinear high-dimensional dynamical systems, we apply our dynamic data-driven reduced subspace approach to several dynamical systems and compare our results against those of brute force MC and other existing methods. Specifically, we analyze our advances using several drastically different dynamical regimes modeled by the nonlinear Lorenz-96 ordinary differential equations as well as turbulent bottom gravity current dynamics modeled by the 2-D unsteady incompressible Reynolds-averaged Navier-Stokes (RANS) partial differential equations. We compare the accuracy, efficiency, and robustness of different methodologies and algorithms. With the Lorenz- 96 system, we show how the performance differs under periodic, weakly chaotic, and very chaotic dynamics and under different observation layouts. With the bottom gravity current dynamics, we show how model parameters, domain geometries, initial fields, and boundary forcing formulations can be identified and how the Bayesian methodology performs when the candidate model space does not contain the true model. The results indicate that our active Bayesian learning framework can better infer the state variables and dynamical model identity with fewer observations than many alternative approaches in the literature.

Nonparametric Bayesian Learning for Collaborative Robot Multimodal Introspection

Nonparametric Bayesian Learning for Collaborative Robot Multimodal Introspection PDF Author: Xuefeng Zhou
Publisher: Springer Nature
ISBN: 9811562636
Category : Automatic control
Languages : en
Pages : 149

Book Description
This open access book focuses on robot introspection, which has a direct impact on physical human-robot interaction and long-term autonomy, and which can benefit from autonomous anomaly monitoring and diagnosis, as well as anomaly recovery strategies. In robotics, the ability to reason, solve their own anomalies and proactively enrich owned knowledge is a direct way to improve autonomous behaviors. To this end, the authors start by considering the underlying pattern of multimodal observation during robot manipulation, which can effectively be modeled as a parametric hidden Markov model (HMM). They then adopt a nonparametric Bayesian approach in defining a prior using the hierarchical Dirichlet process (HDP) on the standard HMM parameters, known as the Hierarchical Dirichlet Process Hidden Markov Model (HDP-HMM). The HDP-HMM can examine an HMM with an unbounded number of possible states and allows flexibility in the complexity of the learned model and the development of reliable and scalable variational inference methods. This book is a valuable reference resource for researchers and designers in the field of robot learning and multimodal perception, as well as for senior undergraduate and graduate university students.

Stochastic Methods for Modeling and Predicting Complex Dynamical Systems

Stochastic Methods for Modeling and Predicting Complex Dynamical Systems PDF Author: Nan Chen
Publisher: Springer Nature
ISBN: 3031222490
Category : Mathematics
Languages : en
Pages : 208

Book Description
This book enables readers to understand, model, and predict complex dynamical systems using new methods with stochastic tools. The author presents a unique combination of qualitative and quantitative modeling skills, novel efficient computational methods, rigorous mathematical theory, as well as physical intuitions and thinking. An emphasis is placed on the balance between computational efficiency and modeling accuracy, providing readers with ideas to build useful models in practice. Successful modeling of complex systems requires a comprehensive use of qualitative and quantitative modeling approaches, novel efficient computational methods, physical intuitions and thinking, as well as rigorous mathematical theories. As such, mathematical tools for understanding, modeling, and predicting complex dynamical systems using various suitable stochastic tools are presented. Both theoretical and numerical approaches are included, allowing readers to choose suitable methods in different practical situations. The author provides practical examples and motivations when introducing various mathematical and stochastic tools and merges mathematics, statistics, information theory, computational science, and data science. In addition, the author discusses how to choose and apply suitable mathematical tools to several disciplines including pure and applied mathematics, physics, engineering, neural science, material science, climate and atmosphere, ocean science, and many others. Readers will not only learn detailed techniques for stochastic modeling and prediction, but will develop their intuition as well. Important topics in modeling and prediction including extreme events, high-dimensional systems, and multiscale features are discussed.

Advances in Neural Information Processing Systems 11

Advances in Neural Information Processing Systems 11 PDF Author: Michael S. Kearns
Publisher: MIT Press
ISBN: 9780262112451
Category : Computers
Languages : en
Pages : 1122

Book Description
The annual conference on Neural Information Processing Systems (NIPS) is the flagship conference on neural computation. It draws preeminent academic researchers from around the world and is widely considered to be a showcase conference for new developments in network algorithms and architectures. The broad range of interdisciplinary research areas represented includes computer science, neuroscience, statistics, physics, cognitive science, and many branches of engineering, including signal processing and control theory. Only about 30 percent of the papers submitted are accepted for presentation at NIPS, so the quality is exceptionally high. These proceedings contain all of the papers that were presented.

Simultaneous Learning of Non-linear Manifold and Dynamical Models for High-dimensional Time Series

Simultaneous Learning of Non-linear Manifold and Dynamical Models for High-dimensional Time Series PDF Author: Rui Li
Publisher:
ISBN:
Category :
Languages : en
Pages : 246

Book Description
Abstract: The goal of this work is to learn a parsimonious and informative representation for high-dimensional time series. Conceptually, this comprises two distinct yet tightly coupled tasks: learning a low-dimensional manifold and modeling the dynamical process. These two tasks have a complementary relationship as the temporal constraints provide valuable neighborhood information for dimensionality reduction and conversely, the low-dimensional space allows dynamics to be learnt efficiently. Solving these two tasks simultaneously allows important information to be exchanged mutually. If nonlinear models are required to capture the rich complexity of time series, then the learning problem becomes harder as the nonlinearities in both tasks are coupled. The proposed solution approximates the nonlinear manifold and dynamics using piecewise linear models. The interactions among the linear models are captured in a graphical model. The model structure setup and parameter learning are done using a variational Bayesian approach, which enables automatic Bayesian model structure selection, hence solving the problem of over-fitting. By exploiting the model structure, efficient inference and learning algorithms are obtained without oversimplifying the model of the underlying dynamical process. Evaluation of the proposed framework with competing approaches is conducted in three sets of experiments: dimensionality reduction and reconstruction using synthetic time series, video synthesis using a dynamic texture database, and human motion synthesis, classification and tracking on a benchmark data set. In all experiments, the proposed approach provides superior performance.

Nonlinear Dynamics and Chaos with Applications to Hydrodynamics and Hydrological Modelling

Nonlinear Dynamics and Chaos with Applications to Hydrodynamics and Hydrological Modelling PDF Author: Slavco Velickov
Publisher: CRC Press
ISBN: 1482284006
Category : Science
Languages : en
Pages : 336

Book Description
A hydroinformatics system represents an electronic knowledge encapsulator that models part of the real world and can be used for the simulation and analysis of physical, chemical and biological processes in water systems, in order to achieve a better management of the aquatic environment. Thus, modelling is at the heart of hydroinformatics.&n

Handbook of HydroInformatics

Handbook of HydroInformatics PDF Author: Saeid Eslamian
Publisher: Elsevier
ISBN: 0128219505
Category : Science
Languages : en
Pages : 420

Book Description
Advanced Machine Learning Techniques includes the theoretical foundations of modern machine learning, as well as advanced methods and frameworks used in modern machine learning. Handbook of HydroInformatics, Volume II: Advanced Machine Learning Techniques presents both the art of designing good learning algorithms, as well as the science of analyzing an algorithm's computational and statistical properties and performance guarantees. The global contributors cover theoretical foundational topics such as computational and statistical convergence rates, minimax estimation, and concentration of measure as well as advanced machine learning methods, such as nonparametric density estimation, nonparametric regression, and Bayesian estimation; additionally, advanced frameworks such as privacy, causality, and stochastic learning algorithms are also included. Lastly, the volume presents Cloud and Cluster Computing, Data Fusion Techniques, Empirical Orthogonal Functions and Teleconnection, Internet of Things, Kernel-Based Modeling, Large Eddy Simulation, Patter Recognition, Uncertainty-Based Resiliency Evaluation, and Volume-Based Inverse Mode. This is an interdisciplinary book, and the audience includes postgraduates and early-career researchers interested in: Computer Science, Mathematical Science, Applied Science, Earth and Geoscience, Geography, Civil Engineering, Engineering, Water Science, Atmospheric Science, Social Science, Environment Science, Natural Resources, Chemical Engineering. Key insights from 24 contributors in the fields of data management research, climate change and resilience, insufficient data problem, etc. Offers applied examples and case studies in each chapter, providing the reader with real world scenarios for comparison. Defines both the designing of good learning algorithms, as well as the science of analyzing an algorithm's computational and statistical properties and performance guarantees.

Robotics

Robotics PDF Author: Nicholas Roy
Publisher: MIT Press
ISBN: 0262519682
Category : Computers
Languages : en
Pages : 501

Book Description
Robotics: Science and Systems VIII spans a wide spectrum of robotics, bringing together contributions from researchers working on the mathematical foundations of robotics, robotics applications, and analysis of robotics systems.

Network Bioscience, 2nd Edition

Network Bioscience, 2nd Edition PDF Author: Marco Pellegrini
Publisher: Frontiers Media SA
ISBN: 288963650X
Category :
Languages : en
Pages : 270

Book Description
Network science has accelerated a deep and successful trend in research that influences a range of disciplines like mathematics, graph theory, physics, statistics, data science and computer science (just to name a few) and adapts the relevant techniques and insights to address relevant but disparate social, biological, technological questions. We are now in an era of 'big biological data' supported by cost-effective high-throughput genomic, transcriptomic, proteomic, metabolomic data collection techniques that allow one to take snapshots of the cells' molecular profiles in a systematic fashion. Moreover recently, also phenotypic data, data on diseases, symptoms, patients, etc. are being collected at nation-wide level thus giving us another source of highly related (causal) 'big data'. This wealth of data is usually modeled as networks (aka binary relations, graphs or webs) of interactions, (including protein-protein, metabolic, signaling and transcription-regulatory interactions). The network model is a key view point leading to the uncovering of mesoscale phenomena, thus providing an essential bridge between the observable phenotypes and 'omics' underlying mechanisms. Moreover, network analysis is a powerful 'hypothesis generation' tool guiding the scientific cycle of 'data gathering', 'data interpretation, 'hypothesis generation' and 'hypothesis testing'. A major challenge in contemporary research is the synthesis of deep insights coming from network science with the wealth of data (often noisy, contradictory, incomplete and difficult to replicate) so to answer meaningful biological questions, in a quantifiable way using static and dynamic properties of biological networks.

Bayesian Inference of Stochastic Dynamical Models

Bayesian Inference of Stochastic Dynamical Models PDF Author: Peter Guang Yi Lu
Publisher:
ISBN:
Category :
Languages : en
Pages : 175

Book Description
A new methodology for Bayesian inference of stochastic dynamical models is developed. The methodology leverages the dynamically orthogonal (DO) evolution equations for reduced-dimension uncertainty evolution and the Gaussian mixture model DO filtering algorithm for nonlinear reduced-dimension state variable inference to perform parallelized computation of marginal likelihoods for multiple candidate models, enabling efficient Bayesian update of model distributions. The methodology also employs reduced-dimension state augmentation to accommodate models featuring uncertain parameters. The methodology is applied successfully to two high-dimensional, nonlinear simulated fluid and ocean systems. Successful joint inference of an uncertain spatial geometry, one uncertain model parameter, and [Omicron](105) uncertain state variables is achieved for the first. Successful joint inference of an uncertain stochastic dynamical equation and [Omicron](105) uncertain state variables is achieved for the second. Extensions to adaptive modeling and adaptive sampling are discussed.